Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11201 ATGAAAAGCAGAATCTTAGCTGGATCCACCACTACCCAAATTTTACTCTTTCTTTTTTTCCCCACATCTGATTCAGCCTTTTCACACTCTCCTTTTTTCCACTCTCCTCTTTCCCTTCTCACTCCAACAGAACAGAACACCCTTCTTCCTTCACTGCTCCCATACCCTCTTCTCTCTCTCTCAACCCTCACACTTTCATTTCCACTTTTAGAAAGAGAGAGAGTAAGCCATTTTCCACACACAGAACAACACAACACAATGTGCTGCACCTTCACCTTCTTCTTCTTCCTCCTCCTACTTGCAGCAGCACCTCTGCACTTAACCTCATCTGAACCCATCATCAACAGAAGGATCCTCCACCAACCCTTTCAACCCCAAAACACACTCCCTCCTTCTCAGCCTCCAAACTCACCTCCACCTTCTCCTCCTCCTTCACCTTCACCTCCAAACCCAAAGTACCCATTTTCCACAACCACCACTCCCAATGCTTCCACACCCTTCTTCCCCACATACCCATCTTCACCACCTCCTCCTGCTCCCTCTGCCTTCGCTTCCTTCCCTGCTAACATCTCCTCCCTTATCCTTCCCCAAACCCCCAAATCCAAATCTTCCTCCGGTAAGCTTCTCGGCGTCGCCATTGCCGCTGTCGTCTGTGCTCTCGCCGTCGTTGCTATCTCCGCCTTCGTCTACTGCCGCCGTCGCCGGAAAAGCTACTCTGCCGATGAGAAGACCCTCAGATCCGACAGCAGTATCCGTCTCTTCCCCCGTGAAGCTCCCGGCGGGAACCGGAAAACGAGGAACGTCTCTTCCACGAGCTCAGAGTTTCTCTACCTTGGCACCATTGTCAACTCTCGCGGCGATGAACTACCTGATCCTCGAGCAACCGGAGGTAACGGTGGCGCTGCTCTGAATCCACGGAAAATGGACTCGCCGGAGCTTCAGCCACTCCCGCCGCTGGCGCGGCAAGCTTCGAGGCTTCGCGATGAAGTGCCGGTGGCGACGGGGGAAGACGATGAAGAGGAGTTCTACTCGCCGAGAGGGTCTCTGGGTGGCCGTGAAAGCTCCAATGGAACCGGATCGGGTTCTCGGAGAGTGTTCAACGCCATTGCAGCTGAGAATTTCGTGGGTCGAAGCAGCACTGAATCCACTTCCTCTTCTTACTCTTCTTCATCTTCTGCTTCCCCTGATCGTTCTCACTCCATTAGTCTCTCGCCACCGGTGAGCATAAGCCCGAGAAGATCACAACCTAAGTCGCCGGAAACCATACTAACCCACCATTCCTCTCCTCCTCCTCCGCCGGCGGCGGCTGCACCACAATCACTCCCCGCCGGCGACGGCAGAAGCTCATTCTCCTCATCCACACTCTCCTCCCCGCGAGCTTCCTCAAACCAGCACGTGCAGTCTTCTTCTTCAATGTCTTCAACGCCGGAGCGAGGAGTATTCGTCGGAGAGTGTCAGTCACCGTCGCTGTCACCGCTCTCTCTGTCGCCGAAGAAAAACCCAGATGGGTTGAGTGTTCCACTCGAAAAGACTCAATCTTGTCGTTCATCCCCGAAAAACAACAACGAAGGTTCTTCTCCAAGGTTATCCAATGCTTCTTCAAGTGGCAAGTCCGTGTCTTCCTCTTCGGCGTTTTCTCTGCCGTCGCCGGATAAAATGTCGGCGATGCATCAGCATCATGGGTTGGATCAGTCTCCGACTATATCAGATGTATCAGATCGGTATAGGCATTCTCCTCTTTCATCACTGCCTTTATCACCGACATTGCTTTCATCGCCGGAGAGAGAGTCAAACCCTCAATCAGCACATTCACGGAAGCATTGGCAGATTCCAGACCTCTTAACTGGTGAATCACCAACTATTCAACCCGTTTCGCTTCAACCTGTGGTGTCTCAAAGGAAACACTGGGAAATTCCGGTTCTTTCAACACCCATTGCTCCTTCAGTTAACGTTTCAACTGCTGCTGCTCCTCCTCCACCGCCGCCTCCACCACCACCACCGCCGGTTCCACGACAGAGGAAGCAGTGGGAAGTGCCTTCTCCTTCAACGCCTGTCGGTCAACCCATTTCTAGACCGCCGGAACTGACACCTCCTTCAAGGCCTTTTGTGTTGCAAACCCCAACAACCAAGGTTTCTCCTGTTGAGTTGCCACCTAGTTCTCAGAATTTGGGGGTGATTGAGGAGAATTCTGAGGAGACAGCTAAACCTAAGTTGAAGCCTTTGCATTGGGACAAAGTGAGGGCCAGCTCTGATCGTGAAATGGTGTGGGATCAGTTGAGGTCCAGCTCTTTCAAGTTGAATGAGGAGATGATCGAAACGTTATTTGTGGTTAACACACCAACCCCAAAACCCAAGGATACTACTCCACGCTCAGTTCTTGCCCCACAAAATCAGGAGGATAGGGTACTGGATCCTAAGAAGTCCCAAAATATTGCTATCTTGCTGAGGGCGCTTAACGTGACTATAGAAGAAGTGTGTGAAGCACTGTTAGAAGGTATTACTGATACACTTGGAACTGAACTACTTGAAAGCTTGTTAAAAATGGCGCCTAGCAAGGAAGAAGAACGTAAACTGAAGGAACATAAAGATGACTCTCCAACCAAGCTTGGGCCTGCTGAGAAATTTCTGAAGGCAGTGCTTGATGTACCTTTTGCATTTAAAAGGGTGGAAGCAATGCTTTACATAGCCAATTTTGAGTCTGAAATGGAGTATCTTAGGAAATCCTTTCACACACTGGAGGCTGCATGTGAAGAGCTACGAAACAGTAGAATGTTCTTGAAGCTTCTGGAGGCTGTGCTTAAAACTGGGAACCGCATGAATGTGGGGACAAACCGAGGTGATGCACATGCATTCAAGCTTGATACACTTCTCAAGCTGGTTGATGTCAAAGGAGCAGATGGGAAAACCACTCTACTGCACTTTGTTGTACAAGAAATTATTAGAACTGAAGGCGCACGTCTCTCAGGTACCACGAATCAAACACCAAGCACAAATTTGAATGAAGATGCCAAGTGTAGGAAGCTTGGCCTACAAGTAGTATCTAGTCTAAGTTCAGAGCTAGCAAATGTAAAGAAGGCTGCTGCTATGGATTCTGAAGTTCTGAGCAGTGAAGTCTCTAAACTTTCCAAAGGAATTGCACAAATTGCAGAAGTTGTGCAATTAAATGAAAGGGCAGGGTCAGATGAAAGTATTCAGAAATTTACAGAATCAATGAACAAGTTCATGAAAATGGCTGAGGAGGAGATTCTAAAAATTCAAGCCCAAGAGAGTGTTGCATTATCCCTTGTGAAGGAGATCACAGAATATTTCCATGGGAACTTGTCAAAGGAAGAGGCTCATCCATTTAGAATCTTCATGGTAGTAAGAGACTTCTTGACAGTTCTTGACAGGGTATGCAAAGAAGTTGGGATGATAAATGAGAAAACAATGGTTAGTTCTGCATATAGATTCCCAGTTCCAGTGAACCCAATGCTTCCACAACCACTTCCAGGACTACATGGAAAGCGACAGTACAGCTCTTCTGATGATGATAGTCCATCACCTTAG 3546 0.4887 MKSRILAGSTTTQILLFLFFPTSDSAFSHSPFFHSPLSLLTPTEQNTLLPSLLPYPLLSLSTLTLSFPLLERERVSHFPHTEQHNTMCCTFTFFFFLLLLAAAPLHLTSSEPIINRRILHQPFQPQNTLPPSQPPNSPPPSPPPSPSPPNPKYPFSTTTTPNASTPFFPTYPSSPPPPAPSAFASFPANISSLILPQTPKSKSSSGKLLGVAIAAVVCALAVVAISAFVYCRRRRKSYSADEKTLRSDSSIRLFPREAPGGNRKTRNVSSTSSEFLYLGTIVNSRGDELPDPRATGGNGGAALNPRKMDSPELQPLPPLARQASRLRDEVPVATGEDDEEEFYSPRGSLGGRESSNGTGSGSRRVFNAIAAENFVGRSSTESTSSSYSSSSSASPDRSHSISLSPPVSISPRRSQPKSPETILTHHSSPPPPPAAAAPQSLPAGDGRSSFSSSTLSSPRASSNQHVQSSSSMSSTPERGVFVGECQSPSLSPLSLSPKKNPDGLSVPLEKTQSCRSSPKNNNEGSSPRLSNASSSGKSVSSSSAFSLPSPDKMSAMHQHHGLDQSPTISDVSDRYRHSPLSSLPLSPTLLSSPERESNPQSAHSRKHWQIPDLLTGESPTIQPVSLQPVVSQRKHWEIPVLSTPIAPSVNVSTAAAPPPPPPPPPPPPVPRQRKQWEVPSPSTPVGQPISRPPELTPPSRPFVLQTPTTKVSPVELPPSSQNLGVIEENSEETAKPKLKPLHWDKVRASSDREMVWDQLRSSSFKLNEEMIETLFVVNTPTPKPKDTTPRSVLAPQNQEDRVLDPKKSQNIAILLRALNVTIEEVCEALLEGITDTLGTELLESLLKMAPSKEEERKLKEHKDDSPTKLGPAEKFLKAVLDVPFAFKRVEAMLYIANFESEMEYLRKSFHTLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARLSGTTNQTPSTNLNEDAKCRKLGLQVVSSLSSELANVKKAAAMDSEVLSSEVSKLSKGIAQIAEVVQLNERAGSDESIQKFTESMNKFMKMAEEEILKIQAQESVALSLVKEITEYFHGNLSKEEAHPFRIFMVVRDFLTVLDRVCKEVGMINEKTMVSSAYRFPVPVNPMLPQPLPGLHGKRQYSSSDDDSPSP. 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11201 1181 MobiDBLite consensus disorder prediction 649 698 - -
Seca3g11201 1181 MobiDBLite consensus disorder prediction 375 620 - -
Seca3g11201 1181 PANTHER FORMIN-RELATED 487 1175 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Seca3g11201 1181 Pfam Formin Homology 2 Domain 730 1128 IPR015425 -
Seca3g11201 1181 MobiDBLite consensus disorder prediction 506 549 - -
Seca3g11201 1181 ProSiteProfiles Formin homology-2 (FH2) domain profile. 728 1154 IPR015425 -
Seca3g11201 1181 SMART it6_source 728 1143 IPR015425 -
Seca3g11201 1181 MobiDBLite consensus disorder prediction 349 363 - -
Seca3g11201 1181 MobiDBLite consensus disorder prediction 127 155 - -
Seca3g11201 1181 MobiDBLite consensus disorder prediction 444 477 - -
Seca3g11201 1181 MobiDBLite consensus disorder prediction 286 363 - -
Seca3g11201 1181 MobiDBLite consensus disorder prediction 653 674 - -
Seca3g11201 1181 MobiDBLite consensus disorder prediction 375 424 - -
Seca3g11201 1181 MobiDBLite consensus disorder prediction 560 598 - -
Seca3g11201 1181 MobiDBLite consensus disorder prediction 123 159 - -
Seca3g11201 1181 MobiDBLite consensus disorder prediction 1159 1181 - -
Seca3g11201 1181 Gene3D Formin, FH2 domain 722 1138 IPR042201 -
Seca3g11201 1181 SUPERFAMILY Formin homology 2 domain (FH2 domain) 658 1141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11201 Seca-Chr3 259407695 259412664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11201 676 1170 FH2 protein (formin) Gene Family AT3G25500 75.551 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11201 - - gmx:100802678 1371.68