Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11197 ATGAACACTCAGTCGCAGCAGCAACAACAACAAGGCCAATACAAAAAACGAGAATTCAAGGAAGAAGAAGAAAACCGGTTGCTACAAAGCGATTGTGAGACAATACCATTATCCTCACCCCACTCATCACCATTAACACTTGATGATGGAAACGCAGAGGATTTCATTTATGCAGCAAAGGACAAGGTCCAAATATTCGACGTGGAGTCCGTCAGCGCCACCGGGTCCACGGCGGTGCCACCGTTTTCATGGAAGAAGCTGTGGCTGTTCACAGGGCCAGGGTTGCTTATGAGCGTGGCGTTTTTGGACCCAGGGAACTTGGAAGGTGACCTTCAAGCTGGTGCCATTGCAGGGTACTCTCTGCTTTGGCTATTGATGTGGTCAACCATAATGGGGCTTCTCATACAGCTTCTGTCAGCGAGGCTTGGTGTTGCCACGGGGCGCCACCTGGCAGAATTGTGCAGGGAGGAGTATTCCAATTGGGCAAGGCTAGTGCTTTGGTTCTTGGCTGAGTTGGCTTTGATTGCTGCTGATATTCAAGAGGTTATTGGTAGTGCTATTGCTATTAAGATTCTTAGCCATGGGATTCTCCCCATTTGGGCTGGTGTGGTAATCACAGCCTTTGATTGTTTCTTCTTTCTGTTTCTTGAGAATTATGGAGTGAGGAAGTTGGAAGGTGTTTTTGCAATTTTCATTGGAACTATGGCCTTTTCTTTTGCGTGGATGTTCTTTGACACAAATCCAAGTGAAGAAGAACTTATGATGGGTCTTTTGATCCCAAGAGTTAGCTCAAAAACACTTCGCCAGGCTGTGGAAATTGTGGGTTGTGTTATAACCCCACACAATGTATTCCTCCATTCTGCATTGGTACAATCAAGAGACATTGATATCCGTAACAAAGGCCAGGTTCAAGAGGCTATCAATTACTACACAATTGAGTCATCAATTGCACTTTTAGTCACCTTGGTGATCAATCTATTTGTAATAACTGTTTTCGCTAGGGTGTTCTATGGTACAGAACAGGCCAATGGCATAGGATTGGTAAATGCAGGGCAATATCTTGAGGAGCGGTATGGAGGAGGGTTGTTTCCAATTCTCTATATATGGGGTATTGGTTTATTAGCAGCTGGACAAAGTAGCACCATCACTGGTACATATGCAGGGCAGTTTATAACTGAGGGTTTTCTGAAGCTCAATATAAAGAAGTGGTTGAGGGCATTGATCACTAGAAGTTGTGCAATTGTTCCAACTATGATTGTGGCCATTGTTTTTAATACATCAGAAGGTTCATTGGATACCTTGAATGAATGGCTTAATGTGCTCCAAGCAATACAGATTCCTTTTGCACTTATCCCTCTTCTTACTTTGGTGTCCAAAGAGGAGGTCATGGGGTCCTTCAGAATAGGACCAATAGTAGAGAGGGTGGCTTGGACTGTGGCTGTGCTGGTAATATTGGTTTATGGATATATGTTATTAGGTTTCTTCCTCTCTGAAGTGAAGGGACTATTGTTTGGTTTTTTAGTCTGCCTTGGCGCTTCAGCATGGATTGCATTCATTGCATATCTTGTTAAACATAGTGGTGCCATTCCTTCTATTCTGGTGAGGTCCCCTAATTCAAAAGGCTTTACTCTTGCTGGAAACTAA 1644 0.438 MNTQSQQQQQQGQYKKREFKEEEENRLLQSDCETIPLSSPHSSPLTLDDGNAEDFIYAAKDKVQIFDVESVSATGSTAVPPFSWKKLWLFTGPGLLMSVAFLDPGNLEGDLQAGAIAGYSLLWLLMWSTIMGLLIQLLSARLGVATGRHLAELCREEYSNWARLVLWFLAELALIAADIQEVIGSAIAIKILSHGILPIWAGVVITAFDCFFFLFLENYGVRKLEGVFAIFIGTMAFSFAWMFFDTNPSEEELMMGLLIPRVSSKTLRQAVEIVGCVITPHNVFLHSALVQSRDIDIRNKGQVQEAINYYTIESSIALLVTLVINLFVITVFARVFYGTEQANGIGLVNAGQYLEERYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFITEGFLKLNIKKWLRALITRSCAIVPTMIVAIVFNTSEGSLDTLNEWLNVLQAIQIPFALIPLLTLVSKEEVMGSFRIGPIVERVAWTVAVLVILVYGYMLLGFFLSEVKGLLFGFLVCLGASAWIAFIAYLVKHSGAIPSILVRSPNSKGFTLAGN. 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11197 547 Pfam Natural resistance-associated macrophage protein 108 469 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g11197 547 NCBIfam Nramp family divalent metal transporter 92 461 - -
Seca3g11197 547 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 85 463 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g11197 547 Hamap Divalent metal cation transporter MntH [mntH]. 73 495 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g11197 547 MobiDBLite consensus disorder prediction 1 25 - -
Seca3g11197 547 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 19 524 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g11197 547 PRINTS Natural resistance-associated macrophage protein signature 270 293 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g11197 547 PRINTS Natural resistance-associated macrophage protein signature 439 458 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g11197 547 PRINTS Natural resistance-associated macrophage protein signature 377 396 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g11197 547 PRINTS Natural resistance-associated macrophage protein signature 405 422 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g11197 547 PRINTS Natural resistance-associated macrophage protein signature 166 192 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g11197 547 PRINTS Natural resistance-associated macrophage protein signature 196 215 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g11197 547 PRINTS Natural resistance-associated macrophage protein signature 221 242 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11197 Seca-Chr3 259337699 259341029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11197 17 526 Inorganic Solute Cotransporters AT1G47240 71.484 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11197 K21398 - gmx:100801411 930.628