Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11186 ATGCGGCAGCTTACTGCACTGGACTTCTCTTGGCTCGTCGTGTCCTTAAAAAGCTTGAAATGGATGAGGAGTATGAGGGGAATGTGGAGGCTACTGGAGAGGATTTTTCAGTGGAGCCTGCTGATACCAGGAGACCATTCCGTGCTCTTCTTGATGTTGGTCTTATTAGGACCACAACTGGAAATCGTGTCTTTGGGAGCTCTCGATGGGGGCTTGGATATTCCTCACAGTGACAAAAGGTTTGCTGGTTTTGATAAGGAGAAGAAGGATCTTGATGCTGAGGTTCACCGCAAATACATCTTTGGTGGACATGTTGCTACCTATATGAAGACTTTGATGGAAGATGAACCAGAGAAATACCAGTCACACTTTAGTGAATATATCAAGCGAGGAATAGAGCCTGATGGACTTGAGGAGCTGTACAAGAAGGTTCATGCTGCCATTCGTGCAGATCCAACTGCAAAGAAATCAGAGAAGCAGCCACCAAAGGAACACAAGAGGTACAACCTGAAGAAGCTTACCTATGAGGAGAGGAAGGCTAAGTTGATTGCACGCCTGCAGGCTCTCACCTCTGCTGCTGAAGGTCCTGATGATGATGATGATGAGTGA 609 0.4663 MRQLTALDFSWLVVSLKSLKWMRSMRGMWRLLERIFQWSLLIPGDHSVLFLMLVLLGPQLEIVSLGALDGGLDIPHSDKRFAGFDKEKKDLDAEVHRKYIFGGHVATYMKTLMEDEPEKYQSHFSEYIKRGIEPDGLEELYKKVHAAIRADPTAKKSEKQPPKEHKRYNLKKLTYEERKAKLIARLQALTSAAEGPDDDDDE. 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11186 202 Gene3D - 59 193 - -
Seca3g11186 202 MobiDBLite consensus disorder prediction 151 171 - -
Seca3g11186 202 PRINTS Ribosomal protein L5 signature 108 128 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca3g11186 202 PRINTS Ribosomal protein L5 signature 66 85 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca3g11186 202 Pfam Ribosomal L18 C-terminal region 137 190 IPR025607 -
Seca3g11186 202 SUPERFAMILY Translational machinery components 65 153 - -
Seca3g11186 202 PANTHER RIBOSOMAL PROTEIN L5-RELATED 65 193 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11186 Seca-Chr3 259246536 259248147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11186 66 193 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 74.219 2.04e-66 204