Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11185 ATGTTTTATTCTATATTTTTTATCATTTGTGTTTTTTTTTATGTTCACTGTAGTTGTGGCTCTTGTGGATACCCTCTGAACTTGACATCATCAAATCGAATCACATCTAACATTGCATCTGAATATCAGAAGTCTGTTAAGAAAGGATCAATCTCTTTTGCTTCAGTTGATCTCAGCCGATTTACACAGGTTGATGAAATAAATTGTTTTCCTGTCTCATGGTTTTATCCTTCAAAGACTAAACTGCTTTGCCGTAAGTGTGGGGTTCATATTGGTTATGGTTATGTTGGAGAATCACCTGCCTTTTGTGGAATTGAGCCTCCCATTTCATCTAGCCCTCAGAGAAAATTCACCAAGAGTCTTGAAGAGGTTGACATGGGAGATCTTTCTAGAAATAATGCTACCTCCATCATGCACCTCCCGGATGATTGCCTTACTATTATTTTCCATGCTTTAGATAGTCGCATTGATCGTGAATCATTTGGCCTGACTTGCCATCGATGGCTCCATGTTCAAGATTTCAACCGTCGGTCACTGCAATTTGAGTGTTCATTCACTGTACTAAGCCTTGCCTTACACAGGAAGAGTCTTGATGTTCACACATTGCATCTTCATAGGTTGCTGAGGCGCTTTCAACATTTAGAATCTTTATCCCTATGTGGTTGTAGAGAGCTGAATGATTCAGGATTGACCCGTTTGCTAAGCTATGGATCAAATTTACGAAAACTTAATCTAGATTGTTGTTTGCAAATCACTGACTATGGACTATCCCTGGTTGCTTCTGGTTGTCCCTCATTGATGACAGTTAGTCTCTATCGTTGCCTCAATGTTACTGATAAAGGGTTAGAGACTTTAGCCAGTGCTTGCTTATCTATGAAAAGTGTGAATCTTTCCTACTGCCCAGAGATATCTGACAAAGGGTTAAAAGCTCTCACACAGTGCTGTCACCAGCTTCAGGCAATTAACATATCAAATTGTGAGGGTATAAGTGGTGTTGGCTTTGAAGGGTGTTCAAAAACTCTAGCATATGTAGTGGCTGAGTCTTGTAAGCTTAAGCCAGAAGGGGTCATGGGAATTGTTAGTGGTGGTGGAATAGAGTATCTAGATGTTTCTTGTTTAAGTTGGTCTGTTTTGGGAGATCCCTTGCCTGGAATAGGATTTGCCTCACGCCTCAAAATCCTTAACTTTAGAATGTGCAGAACTGTTTCTGACTCTTCTATTGTAGCAATTGCCAAAGGGTGTCCACTACTTGAAGAATGGAACTTAGCATTATGTCATGAGGTGATGATATCTGGATGGCAGGCAATTGGGATACACTGCCATAATTTGAAGAGACTGCATGTTAATCGTTGCCGCAATCTTGGTGATGGTGGCTTGCAGGCTTTAAGGGATGGTTGCAAAAGTCTCTCCATTTTGTACTTGAATGGTTGTTCTCGCTTGACACCTATTGCATTAGAGTTATTCAAGTCTCAGAGACATGATGTTTGCATAAAGGAAATAGAGGCGTATGTTAAGGCTCAGAAATCAAAGGCGTACTTTAAGAGATATCAAGTGAAGTTTAAGAGAAGAAGGGAGGGAAAGACTGATTACCGAGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAGTACAACACCCCAAAATACCGATTTGTGGTTCGATTTGTATCCTATTGTTAG 1680 0.403 MFYSIFFIICVFFYVHCSCGSCGYPLNLTSSNRITSNIASEYQKSVKKGSISFASVDLSRFTQVDEINCFPVSWFYPSKTKLLCRKCGVHIGYGYVGESPAFCGIEPPISSSPQRKFTKSLEEVDMGDLSRNNATSIMHLPDDCLTIIFHALDSRIDRESFGLTCHRWLHVQDFNRRSLQFECSFTVLSLALHRKSLDVHTLHLHRLLRRFQHLESLSLCGCRELNDSGLTRLLSYGSNLRKLNLDCCLQITDYGLSLVASGCPSLMTVSLYRCLNVTDKGLETLASACLSMKSVNLSYCPEISDKGLKALTQCCHQLQAINISNCEGISGVGFEGCSKTLAYVVAESCKLKPEGVMGIVSGGGIEYLDVSCLSWSVLGDPLPGIGFASRLKILNFRMCRTVSDSSIVAIAKGCPLLEEWNLALCHEVMISGWQAIGIHCHNLKRLHVNRCRNLGDGGLQALRDGCKSLSILYLNGCSRLTPIALELFKSQRHDVCIKEIEAYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFVSYC. 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11185 559 Pfam Leucine Rich repeat 439 462 IPR001611 GO:0005515
Seca3g11185 559 Pfam Leucine Rich repeat 289 311 IPR001611 GO:0005515
Seca3g11185 559 Gene3D - 135 176 - -
Seca3g11185 559 CDD F-box_AtTIR1-like 139 176 - -
Seca3g11185 559 SUPERFAMILY Translational machinery components 511 555 - -
Seca3g11185 559 PRINTS Ribosomal protein L5 signature 543 559 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca3g11185 559 PRINTS Ribosomal protein L5 signature 520 539 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca3g11185 559 PANTHER UNCHARACTERIZED 139 488 - -
Seca3g11185 559 SMART LRR_CC_2 388 413 IPR006553 -
Seca3g11185 559 SMART LRR_CC_2 289 314 IPR006553 -
Seca3g11185 559 SMART LRR_CC_2 466 490 IPR006553 -
Seca3g11185 559 SMART LRR_CC_2 237 262 IPR006553 -
Seca3g11185 559 SMART LRR_CC_2 440 465 IPR006553 -
Seca3g11185 559 SMART LRR_CC_2 263 288 IPR006553 -
Seca3g11185 559 SMART LRR_CC_2 211 236 IPR006553 -
Seca3g11185 559 SMART LRR_CC_2 315 340 IPR006553 -
Seca3g11185 559 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 514 555 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca3g11185 559 SUPERFAMILY F-box domain 131 171 IPR036047 GO:0005515
Seca3g11185 559 Gene3D Ribonuclease Inhibitor 177 367 IPR032675 -
Seca3g11185 559 FunFam EIN3-binding F-box protein 1 136 173 - -
Seca3g11185 559 SUPERFAMILY RNI-like 164 486 - -
Seca3g11185 559 Gene3D Ribonuclease Inhibitor 368 505 IPR032675 -
Seca3g11185 559 Gene3D - 506 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11185 Seca-Chr3 259240624 259246249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11185 503 557 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 85.455 1.27e-25 105