Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11182 ATGGGAAACAGTGAGGATGGGAAATCTGTTAAGACTGAAAAGCCTGCTTCACCTGTAACAACTGATCAGACCAATCAGGCCAACCAGCCTAACATTCATGTCTATCCTGATTGGGCTGCCATGCAGGCATATTATGGGCCAAGAGTCAATGTTCCACCATATTTCAACTCAGCTGTCGCTTCCGGTCACGCTCCTCATCCATACATGTGGGGGCCACCACAGCCTATGATGCCACCATATGGGCCGCCTTATGCAGCATTTTATTCACATGGAGGGGTTTATACTCACCCTGCAGTTGCTATCGGGCCAAATTCACATGGTCAAGGAATTCCATCTTCACCTGCTGCTGGGACTCCTTCAAGTGTAGAGACACCAACCAAATTATCTGGAAATACTGATCAGGGTTTAATGAAGAAATTGAAAGGATTTGATGGGCTTGCAATGTCAATAGGCAATTGCAATGCTGAGAATGCTGAGCGTGGAGCTGAAAATAGGCTGTCAAAGAGTATGGATACTGAGGGTTCCAGTGATGGAAGTGATGGCAACACTGCAGGGACCAATCAAACAAGGAAACGAAGCCGTGAAGGAACGCCGACCACTGATGGAGAAGGGAAAACTGAGACACAAGACAGTCCAGTTTCCAAAGAGACTGCAGCTTCCCAACAGATGGTGTCAGTTACCCCAGTCAGTGTTGCAGGAAAATTAGTTGGACCTGTAGTTTCTTCAGGTATGACTACAGCACTAGAGCTGAGGAACCCTTCGACTGTTCATTCTAAGACATGTTCTACTGGTGCCCCACAACCTTGTGCAGTTTTGCCTTCTGAAGCTTGGATGCAGAATGAACGTGAGCTGAAACGTGAGAGAAGGAAACAATCAAACCGCGAATCTGCTAGAAGGTCTAGGCTGAGGAAGCAGGCTGAGACTGAAGAATTGGCACGAAAAGTTGATGGTTTGACTGCTGAGAATATGACACTGAAATCAGAAATAAATCAATTGACTGAAAATTCTGAGAAGCTGAGGATGGAAAATGCTGCATTAAGGGAAAAACTGAAAAATACTCAACTGGGTCAACCGGAAGAGATAATTTTGAACAACATTGAGAGCAAGAGGACTGCACCTGTAAGTACAGAAAACTTACTATCAAGAGTGAATAATTCCAGTTCTAATGATAGAACTGGAGAGGAAGAGAATGATTTCTGTGAGAACAAACCAAATTCTGGTGCAAAGCTGCATCAACTACTGGATACAAATCCTAGAGCTGATGCTGTAGCAGCTGGTTGA 1281 0.4489 MGNSEDGKSVKTEKPASPVTTDQTNQANQPNIHVYPDWAAMQAYYGPRVNVPPYFNSAVASGHAPHPYMWGPPQPMMPPYGPPYAAFYSHGGVYTHPAVAIGPNSHGQGIPSSPAAGTPSSVETPTKLSGNTDQGLMKKLKGFDGLAMSIGNCNAENAERGAENRLSKSMDTEGSSDGSDGNTAGTNQTRKRSREGTPTTDGEGKTETQDSPVSKETAASQQMVSVTPVSVAGKLVGPVVSSGMTTALELRNPSTVHSKTCSTGAPQPCAVLPSEAWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVDGLTAENMTLKSEINQLTENSEKLRMENAALREKLKNTQLGQPEEIILNNIESKRTAPVSTENLLSRVNNSSSNDRTGEEENDFCENKPNSGAKLHQLLDTNPRADAVAAG. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11182 426 MobiDBLite consensus disorder prediction 168 193 - -
Seca3g11182 426 Pfam Disordered region downstream of MFMR 133 260 - -
Seca3g11182 426 Pfam G-box binding protein MFMR 1 99 IPR012900 -
Seca3g11182 426 CDD bZIP_plant_GBF1 286 334 IPR045314 GO:0003700|GO:0006355
Seca3g11182 426 MobiDBLite consensus disorder prediction 279 308 - -
Seca3g11182 426 MobiDBLite consensus disorder prediction 14 31 - -
Seca3g11182 426 FunFam G-box binding factor 3 284 339 - -
Seca3g11182 426 MobiDBLite consensus disorder prediction 253 308 - -
Seca3g11182 426 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 288 303 IPR004827 GO:0003700|GO:0006355
Seca3g11182 426 MobiDBLite consensus disorder prediction 375 426 - -
Seca3g11182 426 Coils Coil 308 349 - -
Seca3g11182 426 MobiDBLite consensus disorder prediction 106 133 - -
Seca3g11182 426 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 397 IPR044827 GO:0003700|GO:0006355|GO:0043565
Seca3g11182 426 MobiDBLite consensus disorder prediction 159 226 - -
Seca3g11182 426 MobiDBLite consensus disorder prediction 202 226 - -
Seca3g11182 426 MobiDBLite consensus disorder prediction 253 267 - -
Seca3g11182 426 Pfam bZIP transcription factor 281 343 IPR004827 GO:0003700|GO:0006355
Seca3g11182 426 MobiDBLite consensus disorder prediction 1 31 - -
Seca3g11182 426 Gene3D - 284 337 - -
Seca3g11182 426 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 283 346 IPR004827 GO:0003700|GO:0006355
Seca3g11182 426 MobiDBLite consensus disorder prediction 104 135 - -
Seca3g11182 426 SMART brlzneu 281 345 IPR004827 GO:0003700|GO:0006355
Seca3g11182 426 SUPERFAMILY Leucine zipper domain 284 340 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11182 Seca-Chr3 259208359 259214686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11182 1 426 bZIP Transcription Factor Family AT2G46270 49.885 2.00e-116 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca3g11182 MFMR_assoc 1.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11182 K09060 - gmx:547789 668.692