Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11146 ATGGAGGACGATTGGGATCTCCACGCCGTGGTCAGAGGCTGCACCACCGTTACCTCCTCTTCCTCCACCACCACCACCACTGCCTCCTCTGTATCTTCCTCTGCTCTTGGGACTTGTTACCAACCTTCTTCAACTTCAGGAACTTTCTTCCCTATCTTCCCTGCAGAACAAGCAGGGCAAGTTTTGTCCCTTTCAAACCCTTTTGAAGCAAAGAATTCCATTGAAGAATTGCATGAGCTTTACAAGCCTTTCTTCCCCAAATCACACCCTCCTTCCTTGCAGACCTCTTCTCCTTTGTCTTCCTTCTCTTACTCATCTGCACCCAAATCACCTCAGCCACAGCAAAAACAACAGCAGCAGCAGCCAAGTAAGCAGCCTCACCATGCTGGTTCTGCCTCCACCCCAAGATCTAAAAGAAGGAAGAATCAGCTTAAGAAGGTTTGTCAAGTGGCAGCTGAGAATCTCTCTTCAGACATATGGGCATGGAGGAAATATGGTCAAAAACCCATCAAAGGGTCACCATATCCAAGGGGATATTATAGATGTAGCAGCTCAAAAGGGTGTTTAGCTAGAAAACAAGTGGAGAGGAACAAATCAGACCCAACAATGTTCATAGTCACCTACACAGGGGAGCATAGTCACCCTGCTCCTACTCATCGAAATTCCCTTGCTGGCTCCACACGCCAGAAGCCACTAACACCTCAATCTGCCACCGCCGGAGAATCTGCCAAATCACCGGCAAAACCCGTTTCTCCGGCGACCTCAGGGGCGGAGGAAGAAGAAGCTGCACACCTGAGTGCAACAAAGTCAGAGAGCAAAGAGGAGGATATGGAAGATTTGATGAATGATGACGATGAAGAAAATAATGAATTTGGATTTGGGTTATCAGATATGGTGGTGACGGATGATTTCTTTGAAGGTTTAGAAGAATTGACAGGGTCAGGATCAACTACTGGAGACTCTTTTGTAGACCCCTTTGCAGCTAACAATAGCATTGCTCTTCCTTCTTGGGTGGCCAATAATGCTGCCACTGCCGCTGGTGGTAGCTGA 1050 0.4781 MEDDWDLHAVVRGCTTVTSSSSTTTTTASSVSSSALGTCYQPSSTSGTFFPIFPAEQAGQVLSLSNPFEAKNSIEELHELYKPFFPKSHPPSLQTSSPLSSFSYSSAPKSPQPQQKQQQQQPSKQPHHAGSASTPRSKRRKNQLKKVCQVAAENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNKSDPTMFIVTYTGEHSHPAPTHRNSLAGSTRQKPLTPQSATAGESAKSPAKPVSPATSGAEEEEAAHLSATKSESKEEDMEDLMNDDDEENNEFGFGLSDMVVTDDFFEGLEELTGSGSTTGDSFVDPFAANNSIALPSWVANNAATAAGGS. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11146 349 Coils Coil 270 290 - -
Seca3g11146 349 SMART WRKY_cls 156 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g11146 349 ProSiteProfiles WRKY domain profile. 151 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g11146 349 MobiDBLite consensus disorder prediction 262 276 - -
Seca3g11146 349 SUPERFAMILY WRKY DNA-binding domain 152 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g11146 349 MobiDBLite consensus disorder prediction 88 145 - -
Seca3g11146 349 MobiDBLite consensus disorder prediction 277 291 - -
Seca3g11146 349 MobiDBLite consensus disorder prediction 89 132 - -
Seca3g11146 349 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 314 IPR044810 GO:0003700
Seca3g11146 349 FunFam WRKY transcription factor 22 140 210 - -
Seca3g11146 349 Gene3D WRKY domain 140 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g11146 349 MobiDBLite consensus disorder prediction 210 292 - -
Seca3g11146 349 Pfam WRKY DNA -binding domain 158 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g11146 349 MobiDBLite consensus disorder prediction 214 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11146 Seca-Chr3 258781136 258782935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11146 1 348 WRKY Transcription Factor Family AT4G01250 47.606 1.55e-91 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca3g11146 WRKY 1.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11146 K13425 - gmx:100815829 382.104