Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11145 ATGGTGGACGGCGGCGAATTCGCCGACACCATTTGTTCGATCTGCTACGAAGGTCTCAAGCCCATTGTAGAAGATCTCCAATCCATCTCCATATGCGGCCATGTCTTCCACGAGCTCTGTCTGCAGCAATGGTTCGAGTACTGTTCGAGATCGAAGAAGCACACTTGCCCCGTTTGCAAGCAGAATTGCAGGGCCAACGACGCGTGCCGGCTTTATTTTCAGTCGGTTGGAGATGTGAGCGACACTATTCTCTCTCAGAAGCACGTTGATTCTGAGGAAGATTCTGGGGTTCTGCGTAGGGAAGTGAAAAGATTGGAGGTGAAAGTTTCGGGGCTTGGTTCGGTGATGGAACGGCAAGCAAAAGAGTTAGAAGAACTTAAAGATGAGCTTTGTGCTTGCAAGGAGCAGGCAAAAATAGAAATAGCATTGAAGAATGAGGCCTTGAAACAAAAAACATCCTTTCAATACCAGTTTAATATGAAATCAGAGGAGCTTGAGAAGTCAACTTCGGAGTGTTTTAGATTAAAGGATAAAAATATGGCTTTGGCTAAAGAAGTTGCTGCATTAAAATTAGTATCTGATGTTGATCTTGATGAAGAAGAGGTTTTGAAGCTTGCCAGTTTGGGTAATGGGGCCAACAGTAAGGACACGATAGACACATTAAAAAGATCTCTTGTCCTGCGGAACAGGTTTATCCTCCAAATCTTGATGAGTTACAAAGAATTAATGGCCAAGTGCAATCTTTTGGGAAGATGTGAGGCTCGTTATAGTAAAAAGCTTGAGAAGGCTAAAGAGAAGATTGTTAAATTGAAGGCAAGGGTACAAGAACTAGAGACAATGGTTGAAGTAAAAGAGAATGAATATTTGATGTCTCTGAAAGTTCCAAAGAAAGCCAAGTCTTCAAAGAATCTTGAAAATAGCATCAATTCTATTTCTAATTCTGATGCATTGGCAGCTAGCAATTTTTCTTTAAAAGAGCAAAGCAAACAAAGTTGGACACCCAAACCTGGAATTGATCTGACTGCGAATGATGACAGTAAATATTTACAATCCTTGAAGATAGAAAACTTAAATGCTACTAAAAATGAGGCTGTGAATATTAGTAATGGAAGTAAAACTACCTCGTCTCTTGATAAAGAGAGAGATTGTATCTTTATTGATGATGATGCTACCGATTATACTAAAGCATTACCTGAATGTCCAAAACACAACTACAAAGATCAAGAGAGGGATGGTGATACTTTTAGTTTTAGCAAGCCATCTCTTGTGAAGCCAGAAGCAGCATCTCGCATAAAGACTGGACCATCATTTCAAGGAAAATGTAATTTGGATGAGCCTTCAAGAGTTGATATTGACATTAAATTGGATGACATTTCTGCTTGCGCCATGAATGAAGATGCGACGTTACAAGCCAACGTTAAAAAAGCTCAACCTGTGGTTAACATTAGAAAGGAGTCACCATTAACACTTTCAAATTCAGTGGACATCTGCTTTTCTGGTGGATTGCTTGGTCCTGATGGAACTCATCGATACTTGGGTAAATGGTGCAAGCGTGGGCAAAATAGTGAATCAACATCTACTAAAGGATCAAATAATGGGGATTTGATAGCTGTTGGGGCTGATGGTAGAGGTGGCAGAATAAAAGTTCTAAGGAATTCAAGTCAAAGCTTCTTGGACGGTAAAGAAAATTCTGTAAGTTCAAAAAGGTTGAAGTCTGGACCTAAAACAAGTAGTTTGCAGTCCCGGGGGTGCCTGCAGATAGAACACTTCTTTGGGAGGGTCAATCAGTAA 1791 0.4042 MVDGGEFADTICSICYEGLKPIVEDLQSISICGHVFHELCLQQWFEYCSRSKKHTCPVCKQNCRANDACRLYFQSVGDVSDTILSQKHVDSEEDSGVLRREVKRLEVKVSGLGSVMERQAKELEELKDELCACKEQAKIEIALKNEALKQKTSFQYQFNMKSEELEKSTSECFRLKDKNMALAKEVAALKLVSDVDLDEEEVLKLASLGNGANSKDTIDTLKRSLVLRNRFILQILMSYKELMAKCNLLGRCEARYSKKLEKAKEKIVKLKARVQELETMVEVKENEYLMSLKVPKKAKSSKNLENSINSISNSDALAASNFSLKEQSKQSWTPKPGIDLTANDDSKYLQSLKIENLNATKNEAVNISNGSKTTSSLDKERDCIFIDDDATDYTKALPECPKHNYKDQERDGDTFSFSKPSLVKPEAASRIKTGPSFQGKCNLDEPSRVDIDIKLDDISACAMNEDATLQANVKKAQPVVNIRKESPLTLSNSVDICFSGGLLGPDGTHRYLGKWCKRGQNSESTSTKGSNNGDLIAVGADGRGGRIKVLRNSSQSFLDGKENSVSSKRLKSGPKTSSLQSRGCLQIEHFFGRVNQ. 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11145 596 Coils Coil 109 140 - -
Seca3g11145 596 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 595 - -
Seca3g11145 596 Coils Coil 253 287 - -
Seca3g11145 596 Pfam Ring finger domain 11 60 IPR001841 -
Seca3g11145 596 MobiDBLite consensus disorder prediction 558 579 - -
Seca3g11145 596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 96 IPR013083 -
Seca3g11145 596 SUPERFAMILY RING/U-box 9 64 - -
Seca3g11145 596 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
Seca3g11145 596 SMART ring_2 12 59 IPR001841 -
Seca3g11145 596 CDD RING-H2 12 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11145 Seca-Chr3 258756840 258761561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11145 481 596 C3H Transcription Factor Family AT4G01270 44.538 1.31e-20 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11145 K11985 - gmx:100812811 782.711