Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11139 ATGGTGTCCGTGAACCCTAACCCAGCTCAAGGCTTTTACTTCTTCGATCCTTCCAATATGGCCCTTCCCGGTGTCAACCCTCTTCCGGCGCCGCCTCCTCCCCAGCCTCCCGCTCCCGGCGCTGCCACCGCTTCCACTACCGCCGAGGATCCGAGTAAGAAGATCCGAAAACCCTATACGATTACCAAGTCCAGGGAGAGCTGGACCGAGCAGGAACACGACAAGTTTCTAGAAGCTCTCCAATTATTTGATCGTGACTGGAAAAAGATTGAAGCATTTGTTGGTTCAAAAACAGTTATCCAGATACGAAGTCATGCACAGAAGTATTTTCTTAAAGTTCAGAAGAATGGAACAAGTGAACATGTACCTCCTCCTCGGCCAAAGAGAAAAGCTGCACACCCATACCCTCAAAAAGCTCCCAAAATCGCAGCTCCTACTGTATCCCAAGTCACAGGGCCATTGCAATCTTCATCGGCTTTTATTGAACCTGCATACATTTATACCCCAGATTCATCATCTGTACTTGGAACACCAGTTACTAGTGTGCCTTTATCATCTTGGAATTATAATGCTATACCACCAGCCAGTGTGCCACAAATGGCTAGAGGTTTTGCTTGTTCTGAACTCCTTTATGCTTGTTTTTTGTTAGATGACATGGGATTGACAGGAGCTGGACAAGCCGTTCCTCTTAATTGTTGCTATAGCAGCAGTAATGAGAGCATCCATCGAACTTGGCCAAGTAGCAAAGGGATTAATCAACGTGACCAGGACCAGCCAATTAAAGTAATGCCAGATTTCGCAAAAGTATACAGCTTCATCGGCAGTGTATTTGATCCAAATTCAACTAATCACCTACACCGACTAAAACAGATGGACCCAATAAATGTGGAAACGGTAATTAATATCAAGTCCTTCATTGCATTGTTGTTGATGAGAAACCTCTCCATCAATTTAATGAGTCCTGAATTTGAGGATCATGTAAGTTTTGTTCCTTCTTTTCTTGTCATTTTTCCGACATAG 1020 0.4431 MVSVNPNPAQGFYFFDPSNMALPGVNPLPAPPPPQPPAPGAATASTTAEDPSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKIAAPTVSQVTGPLQSSSAFIEPAYIYTPDSSSVLGTPVTSVPLSSWNYNAIPPASVPQMARGFACSELLYACFLLDDMGLTGAGQAVPLNCCYSSSNESIHRTWPSSKGINQRDQDQPIKVMPDFAKVYSFIGSVFDPNSTNHLHRLKQMDPINVETVINIKSFIALLLMRNLSINLMSPEFEDHVSFVPSFLVIFPT. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11139 339 MobiDBLite consensus disorder prediction 23 60 - -
Seca3g11139 339 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Seca3g11139 339 SMART sant 64 112 IPR001005 -
Seca3g11139 339 PANTHER SWI/SNF COMPLEX-RELATED 43 319 - -
Seca3g11139 339 SUPERFAMILY Homeodomain-like 59 115 IPR009057 -
Seca3g11139 339 CDD SANT 67 110 IPR001005 -
Seca3g11139 339 ProSiteProfiles SANT domain profile. 63 116 IPR017884 -
Seca3g11139 339 MobiDBLite consensus disorder prediction 115 138 - -
Seca3g11139 339 Gene3D - 68 115 - -
Seca3g11139 339 FunFam protein REVEILLE 6 isoform X1 67 115 - -
Seca3g11139 339 Pfam Myb-like DNA-binding domain 65 110 IPR001005 -
Seca3g11139 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 114 IPR017930 -
Seca3g11139 339 MobiDBLite consensus disorder prediction 24 40 - -
Seca3g11139 339 NCBIfam myb-like DNA-binding domain, SHAQKYF class 63 112 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11139 Seca-Chr3 258676266 258681856 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g11139 Myb_DNA-binding 2.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11139 - - gmx:778090 471.085