Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11138 ATGACACACCCCCCTTTCTCTCTCTCTACACTAACCTCATTTGCTACTTCACTCTCTCACTGTTTTCTTCTCCAATTTGATTCAAAATATTCCATCTTCACTCTTTTTCTTCTTTCTCTCTCTCTCCACTCACACACAAAGAAACTTCCATTCTTTCCTTCTCTCCTATCAAAAATAACCAATGCCATCCATTTTCTAATACACTCTCTGAATCCTTCATTCAATTCAACCATGTCAGTGTACGACGCAGCTTTCGTCGACACTGAGCTTTCCAAACGCACCTCCATCTTCGGCCTCCGTCTCTGGGTCGTCATCGGAATCCTCGTCGGTTCCCTCATCGTCATCACCCTCTTCCTCCTCTCCCTCTGCCTCACCTCTCGCCGCCGCAACAACAACAAAACCTCCACCAAGCTCCGTCACCCTTCCTCCGCCGCCACCCCCGTCGTCTCCAAGGAAATCCAGGAGATCGTCCACGTCCCTCCCTTGCCGGAGATCCACGTCGACACCGTCAAGCTTGAGCTCCTCCACCACCGTGCCTCCACCAGCGGGGAGAGCAAGGGAACCGCCAGCGTCTGCGAAACGGCGTCGTCTTTGGGGAGCGGTAGCATTGGGCCAGAAGTTTCGCATCTTGGTTGGGGAAGATGGTATACGCTGAGGGAACTCGAAGCTGCAACCAATGGTTTGTGTGAAGAAAATGTGATTGGAGAAGGTGGCTATGGAATTGTCTACCGTGGACTTCTCCCTGATGGTACCAAAGTTGCTGTCAAGAACCTTTTGAATAACAAGGGCCAAGCTGAGAGAGAATTTAAAGTTGAGGTAGAAGCAATTGGTCGTGTGCGGCACAAGAATCTTGTTAGGCTGCTTGGATATTGTGTTGAGGGTATGGATTTATATTACAGGATGCTTGTGTATGAATATATTGATAATGGCAATCTGGAACAATGGCTTCATGGGGATGTTGGAAATGTAAGCCCTATGACATGGGATATCCGGATGAACATTATATTGGGCACAGCAAAAGGATTGGCTTATCTTCACGAGGGTCTTGAACCAAAAGTTGTTCACCGAGATGTGAAATCAAGCAACATCCTCATTGATCGCCAATGGAACCCAAGAGTTTCTGATTTTGGGCTTGCTAAGCTTTTGCATTCTGATCACAGTTATGTCACCACTCGGGTGATGGGGACATTTGGTTATGTTGCACCAGAGTATGCCTGCACTGGAATGCTGACTGAGAAGAGTGACGTTTATAGCTTCGGGATACTTATCATGGAGATAATCACTGGGAGAAGTCCTGTTGATTATAGTAGACCGCAAGGAGAGGTTAATTTAATTGAGTGGTTGAAATCTATGGTTGGGAATCGAAAATCTGAGGAAGTAGTTGATCCTAAGCTTCCTGAGAAGCCATCTTCAAAGGCACTTAAACGTGCTCTCTTGGTTGCTCTTCGATGTGTTGACCCTGATTCATCAAAGAGACCTAAAATAGGACATGTGATCCACATGCTTGAGGCTGACGACCTCTTATTCCATGATGATCGAAGGATCAGGGGAGAATCTTCCCATTCGCATCGTGATCATCGCCGAGAGCACAGGGACTCAAGTTTAGATAAAAATCCAAGAGGTGGAGAGATCACTGATCAAAGTGAAGATGATAGTAGTAGAGATCACCATCAGCCCACTAGGTGGGGAAGATAG 1695 0.469 MTHPPFSLSTLTSFATSLSHCFLLQFDSKYSIFTLFLLSLSLHSHTKKLPFFPSLLSKITNAIHFLIHSLNPSFNSTMSVYDAAFVDTELSKRTSIFGLRLWVVIGILVGSLIVITLFLLSLCLTSRRRNNNKTSTKLRHPSSAATPVVSKEIQEIVHVPPLPEIHVDTVKLELLHHRASTSGESKGTASVCETASSLGSGSIGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYRGLLPDGTKVAVKNLLNNKGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGMDLYYRMLVYEYIDNGNLEQWLHGDVGNVSPMTWDIRMNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILIDRQWNPRVSDFGLAKLLHSDHSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYSRPQGEVNLIEWLKSMVGNRKSEEVVDPKLPEKPSSKALKRALLVALRCVDPDSSKRPKIGHVIHMLEADDLLFHDDRRIRGESSHSHRDHRREHRDSSLDKNPRGGEITDQSEDDSSRDHHQPTRWGR. 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11138 564 Pfam Protein kinase domain 231 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11138 564 FunFam Probable serine/threonine-protein kinase At1g01540 208 306 - -
Seca3g11138 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 353 365 IPR008271 GO:0004672|GO:0006468
Seca3g11138 564 ProSiteProfiles Protein kinase domain profile. 228 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11138 564 Gene3D Phosphorylase Kinase; domain 1 210 306 - -
Seca3g11138 564 MobiDBLite consensus disorder prediction 517 564 - -
Seca3g11138 564 CDD STKc_IRAK 234 503 - -
Seca3g11138 564 FunFam Putative receptor-like serine/threonine-protein kinase 307 517 - -
Seca3g11138 564 ProSitePatterns Protein kinases ATP-binding region signature. 234 256 IPR017441 GO:0005524
Seca3g11138 564 PANTHER OS01G0323000 PROTEIN 84 531 - -
Seca3g11138 564 Gene3D Transferase(Phosphotransferase) domain 1 307 515 - -
Seca3g11138 564 SMART serkin_6 228 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11138 564 SUPERFAMILY Protein kinase-like (PK-like) 206 503 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11138 Seca-Chr3 258663391 258666757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11138 197 542 Receptor kinase-like Gene Family AT4G02010 41.972 2.47e-92 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Seca3g11138 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11138 - - gmx:100777348 775.778