Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11136 ATGTCTGTTGAGTCAGCTGAGAATAACATCAAAGGGGTACCAACTCATGGTGGACGCTACGTTCAGTACAATATCTATGGCAACCTCTTTGAGGTTTCCAACAAGTATGTTCCTCCAATTCGCCCTGTTGGCAGAGGCGCTTATGGTATTGTTTGTGCTGCTGTAAATGGTGAGACAGGCGAGGAGGTTGCCATTAAGAAGGTTGGCAATGCATTTGACAACAGAATTGATGCCAAAAGGACCTTACGAGAAATTAAACTTCTTCGACACATGGATCATGAAAATGTGATGTCCATTAAAGACATTATACGACCTCCACAGAAGGAGAACTTCAATGATGTTTACATTGTTTCTGAGTTAATGGACACAGATCTGCATCAAATAATACGTTCCAATCAGCCATTAACAGATGATCATTGTCGGTATTTTCTGTATCAGCTGTTACGGGGGCTCAGATATGTACATTCAGCAAATGTTTTGCATCGTGATCTAAAGCCTAGCAATTTGCTACTGAATGCCAATTGTGACCTTAAGATTGGAGACTTTGGTCTGGCTAGAACTACATCTGAAACTGATTTTATGACTGAGTATGTGGTTACTCGATGGTACCGAGCTCCCGAATTGCTTCTTAATTGTTCAGAATATACAGCAGCCATTGATATATGGTCTGTTGGTTGCATACTTGGTGAGATCATAACAAGACAACCCCTCTTTCCGGGCAAAGATTATGTTCATCAGCTGAGACTGATCACAGAGGTATTAGCTAGATAA 771 0.4112 MSVESAENNIKGVPTHGGRYVQYNIYGNLFEVSNKYVPPIRPVGRGAYGIVCAAVNGETGEEVAIKKVGNAFDNRIDAKRTLREIKLLRHMDHENVMSIKDIIRPPQKENFNDVYIVSELMDTDLHQIIRSNQPLTDDHCRYFLYQLLRGLRYVHSANVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIITRQPLFPGKDYVHQLRLITEVLAR. 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11136 256 ProSiteProfiles Protein kinase domain profile. 37 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11136 256 Gene3D Transferase(Phosphotransferase) domain 1 132 256 - -
Seca3g11136 256 FunFam Mitogen-activated protein kinase 121 256 - -
Seca3g11136 256 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524
Seca3g11136 256 SUPERFAMILY Protein kinase-like (PK-like) 40 253 IPR011009 -
Seca3g11136 256 FunFam Mitogen-activated protein kinase 22 131 - -
Seca3g11136 256 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Seca3g11136 256 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 35 255 - -
Seca3g11136 256 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707|GO:0005524|GO:0006468
Seca3g11136 256 SMART serkin_6 37 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11136 256 Pfam Protein kinase domain 41 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11136 256 Gene3D Phosphorylase Kinase; domain 1 17 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11136 Seca-Chr3 258642134 258645262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11136 1 255 MAP Kinase Gene Family AT4G01370 85.057 6.26e-171 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca3g11136 Pkinase 1.6e-61 CL0016