Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11129 ATGGCAGCTGTTAGGTTTTCGCATATAAGATGTCTACATAGTTCAATCAAGGGTTCTTTGAACATGGAATCAGTTCAACAATTCCACTATCACCATAATGTAGCTACGAACCTCTCAAGAATTGCAAGGTTACCTAATGATTTGTTCAACCGTTCTTATTCCAAAGGAGAGTCACAGTCACCTCAGATATTTGCTCAGAATCAGTTTAGTAATTTGGCTTCTGAATCACTTGTTAGTAGTCACCTCTTTAGTACCAAAACCAATGCTTCATTTAATCCTAGATTCTCTAGCTCTTGTCTTCAAAGTACTCTTCCTTTTGCTTCCACGACCCACTTGTTGAATTGTCGAATGTTTTCATCGTCTTTGGGTGGAAAAGGAAGCAGGGATGGTGACGCAGAAGTTTCTGCTGGGTCTGGTGTAAGTGACATGAATGCTAGTGATGATTCTGTTGTTACAGGTGATGTGGCTGAGAGGATTAAAGATACTTGGAAGAGTGTGGTAGAGATGGCATCAAATGCTGGGGAAAAGGTTAAAGAAGCTTCTGATGATCTCACTCCATATGCTCAACAGTTGCTTGATTCACATCCATATCTTAACAAGGTGGTTATTCCAGTTGGTGGCACTTTAACTGCTACTTTAATAGCTTGGTTCTTGATGCCTAGGGTTTTGAGGAAATTTCACAAATATGCAATGCAAGGTCCTGTTGCTCTATTTCCAGGAAGCATGTCTCGGGAGTCAGTTCCTTATGAGAAAAGTTTTTGGGGTGCTATGGAAGACCCAGTGCGATATTTAGTTACCTTCATTGCATTCTCACAAATTGGTGTAATGGTAGCTCCAACAACTATAACCTCACAATATCTTGCACCTGTTTGGAGGGGTGCAGTGATACTTTCATTTGTATGGTTTTTGCATAGATGGAAAACTAATGTTTTTGCACGGACGTTGGCCAGTCAAAGTTTACTTGGACTCGATAGGGAGAAATTGCTTGCTCTAGACAAAATCTCATCTATTGGTCTATTTGTGATTGGTATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCTGTACAATCTATTGTAACCGTTGGTGGTATAGGAGGAGTGGCTACTGCTTTTGCTGCCAGAGACATTCTTGGCAATGTGTTCAGTGGTTTATCTATGCAGTTTTCAAAGCCCTTTTCAATTGGAGATACAATAAAAGCTGGCTCGATAGAGGGTCAAGTGGTGGAAATGGGTCTTACTACCACATCATTGCTGAGTGCTGAGAAGTTCCCAGTCATTGTGCCAAACACATTTTTTTCTAGCCAGGTTATTGTGAACAAGTCCCGTGCTGAATACCGTGCCATTATTACCAAAATTCCTCTTCAAATTGAGGATTTAAGTAAGATTCCCCAGATATCGAATGATGTAAAAAGCATGTTAAGATCAAATGCGAAGGTTTTCTTAGGAAAAGATGTTCCCTACTGTTTCTTGTCGCGAATAGAAAGTTCATATGCAGAATTGACTCTTGGATACAACCTCAAACACATGGTACTTCACTCATCTCGCAAAGATGAGTTATACTCTGCAGAACAAGATATTCTCCTGCAGGCAGTTCAGATCATTAAAAATCATGGTGTTGCTCTTGGAAGCACATGGAATGACATGTCTAGTAAGTAA 1656 0.4046 MAAVRFSHIRCLHSSIKGSLNMESVQQFHYHHNVATNLSRIARLPNDLFNRSYSKGESQSPQIFAQNQFSNLASESLVSSHLFSTKTNASFNPRFSSSCLQSTLPFASTTHLLNCRMFSSSLGGKGSRDGDAEVSAGSGVSDMNASDDSVVTGDVAERIKDTWKSVVEMASNAGEKVKEASDDLTPYAQQLLDSHPYLNKVVIPVGGTLTATLIAWFLMPRVLRKFHKYAMQGPVALFPGSMSRESVPYEKSFWGAMEDPVRYLVTFIAFSQIGVMVAPTTITSQYLAPVWRGAVILSFVWFLHRWKTNVFARTLASQSLLGLDREKLLALDKISSIGLFVIGIMALAEACGVAVQSIVTVGGIGGVATAFAARDILGNVFSGLSMQFSKPFSIGDTIKAGSIEGQVVEMGLTTTSLLSAEKFPVIVPNTFFSSQVIVNKSRAEYRAIITKIPLQIEDLSKIPQISNDVKSMLRSNAKVFLGKDVPYCFLSRIESSYAELTLGYNLKHMVLHSSRKDELYSAEQDILLQAVQIIKNHGVALGSTWNDMSSK. 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11129 551 Gene3D - 391 439 IPR023408 -
Seca3g11129 551 MobiDBLite consensus disorder prediction 122 147 - -
Seca3g11129 551 SUPERFAMILY Sm-like ribonucleoproteins 375 440 IPR010920 -
Seca3g11129 551 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 288 374 IPR011014 GO:0016020
Seca3g11129 551 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 156 544 - -
Seca3g11129 551 Pfam Mechanosensitive ion channel 333 540 IPR006685 GO:0016020|GO:0055085
Seca3g11129 551 Gene3D - 286 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11129 Seca-Chr3 258557899 258564739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11129 157 547 Mechanosensitive Ion Channel Family AT4G00290 66.752 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11129 K22047 - gmx:100789047 842.032