Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11127 ATGAAAGTTGAAGTAGAAATCGTTTCTAGAGAAGACATTAGGCCTTCTTCTCCCACACCCAATGACCTCAGAGACTTCAAACTTTCCCTTTTGGATCAGCTTATTCCATCTCCATATGCTCCAATAATCCTATTCTATACCCCACCTGATCAAAGTGACACAACTAGCCTTTCTGAAGCCCCCAAAAGGTTAGAATTGTTGAAGAAATCTTTATCTGAGACACTAACCCTATTCTACCCACTTGGTGGCAGGATCAAAGATGACATGTCCATTGAGTGCAATGATGAAGGGGCTAATTTTGTGGTAACCCAAGTGAAGTGTCCTCTTTCTAAATTTCTTGACCAGCCTCAGCTAAACTTACTGCACAAGTTCCTTCCTAGTGTGCTCATTTCTGAATATTCAAATTCAGGAACCTATGTAACTAACATTCATGTAAATGTTTTTGAATGTGGGGGAATTGCTATTGGCTTATGCATTTCTCACAAGATCCTAGATGGGGCTGCACTAAGCACCTTCCTAAAAGGGTGGACAGGGAGAGCTAGGGGTTGCAACCAATTACCCCAACCCAATTTCATAGCACCTTCTCTCTTTCCCATAAACAGTTCATCACTCACACTCAGAGACTTATCATTGGCTATGTGGGGTTCCTTGTTCAAGCAAGGCAAGTGGGTCACAAAGAGGTTTCTGTTTAGAAACTCAGATATAAACACTCTCAAGGCTCAAATATCAGATACAGAAAACTCTTCCTGTGTAGTGCAAGACCCTACACGTTTAGAGATAGTTTCTGCATTGTTGTGGAAGTCTCTCATGGCTGTGTCCAAGGTAAGGTTTGGTACCCAGAGGCCTTCTCTGCTGACTCATTTGGTGAACCTGCGCAGGAGAATAGATGAGGCTCTTTGTCCACAGCATACCATGGGGAACCTTTTTGGGTTTGTGGCTGTGGAGCACATGAGTGATCATGTGAAGGGGTTGGAAGAGTTGGTGGGTAAGTTGAGGAATGCAATATCAAAAGTTGGTAGTGAATTTGTTGAAGAATTGCAAGGTGACAAGGGAATGTCAATTCTGCAAGAGTCTCTTAGAGCAATAGGTGAGACAGGAGCAAAGAATGAAGTGGACTACTTTGGGTTTAGCAGCTGGTGCAATTTTGAATTCTATGATGCTGATTTTGGGTGGGGAAAGCCCACATGGGTGACTAGTGTTCCTTCAATTGGTTCAGTGTTTATGAATCTTATTATCCTGGTTGATACCAGGCTAAGAGATGGCATAGAAGCTTGGGTTACCTTGGATGAGCAGGACATGACTCATTTGATAGCAGACACTGAACTTCTAACTCATGCAACCTTGGATCCAAGTCCTCTTGCAATGAGTTCAGTTGCCTAA 1380 0.429 MKVEVEIVSREDIRPSSPTPNDLRDFKLSLLDQLIPSPYAPIILFYTPPDQSDTTSLSEAPKRLELLKKSLSETLTLFYPLGGRIKDDMSIECNDEGANFVVTQVKCPLSKFLDQPQLNLLHKFLPSVLISEYSNSGTYVTNIHVNVFECGGIAIGLCISHKILDGAALSTFLKGWTGRARGCNQLPQPNFIAPSLFPINSSSLTLRDLSLAMWGSLFKQGKWVTKRFLFRNSDINTLKAQISDTENSSCVVQDPTRLEIVSALLWKSLMAVSKVRFGTQRPSLLTHLVNLRRRIDEALCPQHTMGNLFGFVAVEHMSDHVKGLEELVGKLRNAISKVGSEFVEELQGDKGMSILQESLRAIGETGAKNEVDYFGFSSWCNFEFYDADFGWGKPTWVTSVPSIGSVFMNLIILVDTRLRDGIEAWVTLDEQDMTHLIADTELLTHATLDPSPLAMSSVA. 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11127 459 Gene3D - 221 446 IPR023213 -
Seca3g11127 459 Gene3D - 1 204 IPR023213 -
Seca3g11127 459 Pfam Transferase family 4 442 - -
Seca3g11127 459 MobiDBLite consensus disorder prediction 1 20 - -
Seca3g11127 459 PANTHER F21J9.9 6 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11127 Seca-Chr3 258543190 258544569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11127 3 397 Monolignol Biosynthesis Gene Families AT5G48930 24.821 2.87e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11127 - - gmx:100305374 648.277