Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11120 ATGGGTTTCCCGGTGGGTTACGCGGAAGTGTTCTTCCCCAACCTCTTCCTTCACACCTTAGCCCTCCTCGGCCTCCTCCGAAACCTCGTCTTCCTCCTCTTCCAATTCATCGGTCTCACTGACTTCCTCGAAACAGAGGTTGCCTGGGCCGACGCCACCCGAACCGCCGACGCTGTCAGAACTCCCTCCGAGTCGGCGCTTCTGATCCGGGAGCTGCTTCCGGTGGCCAAGTACGGCGACATCGCCGGCGGCGAGGAGAGTGAAGGAAGCAACTGCGCGGTGTGCCTGTTCGAGTTCTCCGAGGAGGAAGAGATCCGGTGCTTGAGGAACTGCAAGCACATTTTCCACCGGGGCTGTGTGGACCGTTGGATCGATCATGATCAGAAAACGTGCCCTCTTTGTAGGACCCCTTTTGTCCCTGATGATATGCTTGATGATTACAATCAACGACTCTGGGCTGCTTCTGGTGTTACTGAGTTTTACGGTTACGGAGAAGACTTCACCGCTTCCTTCTAA 516 0.562 MGFPVGYAEVFFPNLFLHTLALLGLLRNLVFLLFQFIGLTDFLETEVAWADATRTADAVRTPSESALLIRELLPVAKYGDIAGGEESEGSNCAVCLFEFSEEEEIRCLRNCKHIFHRGCVDRWIDHDQKTCPLCRTPFVPDDMLDDYNQRLWAASGVTEFYGYGEDFTASF. 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11120 171 SMART ring_2 92 134 IPR001841 -
Seca3g11120 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 142 IPR013083 -
Seca3g11120 171 PANTHER RING ZINC FINGER PROTEIN-RELATED 26 154 - -
Seca3g11120 171 ProSiteProfiles Zinc finger RING-type profile. 92 135 IPR001841 -
Seca3g11120 171 Pfam Ring finger domain 91 135 IPR001841 -
Seca3g11120 171 SUPERFAMILY RING/U-box 86 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11120 Seca-Chr3 258482950 258483465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11120 1 158 C3H Transcription Factor Family AT1G63840 47.531 5.69e-52 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11120 K16281 - gmx:100500261 244.202