Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11117 ATGACAACCCCTTATGTTCGCCGCCGGGACCCCAGTTCCGACCGCCGGAGCACGCCGGACCGGACCATGCGCTCTCCTGCCTACGCCTCCTCCGAGCTCAGCACCTCCCACCACTCAACCTCCTCCTCCTCCGGCAGCCGGAACCCGTTGTCCGCCGTCGCCAGGTCCTTCGCCGGAATTTTCACCGGTTGCTTCACGCCGCCGGAGCCCAACAGCTCCAAGAGCTTCGTGGATTCCGAGGAGTTCAAGTCTTCGTCCGTTGTATCAAATACTTCAAGAGCTGGTAGTCAGAGAGCACGTGGCTCAAATCGAGGTATCAGCATCAGTTTACACAACTCAATTCAGGGGAAAGAGCCTGGAATTGTAAAGTACAATATGGAGGAAATCATCCAAGTCACAAGAAATTTCTCCCCTTCTTTCAAGATTGGCCAAGGTGGTTTTGGGGCAGTCTACAAGGCTAAACTCTTAGATGGAACAATTGTTGCAGTAAAGCGTGCTAAGAAGAGTATACATGAGAAACATTTGGGCATGGAGTTCCAAAGCGAGGTTCAAACACTATCACGGATTGAACATTTGAACTTGGTTAAGTTCTATGGATATTTGGAGCAAGGGGATGAAAGAATTATTGTTGTGGAGTATGTTCCAAATGGAACTCTTAGAGAACATTTAGATTGCATTCATGGAAATGTTCTGGACATGGCTTCTCGTCTAGACATTGCAATTGATGTGGCTCATGCTATCACCTATCTTCATATGTATATAGATCATCCTATCATTCATAGAGACATAAAATCTTCCAACATTCTCCTCACTGAAAACTTTAGAGCTAAGGTAGCAGACTTTGGTTTTGCTAGACAAGCCCCTGATAGTGACTCTGGCATGACCCATGTTTCCACCCAAGTTAAAGGAACAGCTGGCTACTTGGACCCTGAATACTTGAAAACTTATCAACTAACTGAAAAGAGTGATGTGTATTCATTTGGTGTTTTGCTTGTTGAAATAATCACAGGCAGACGACCCATTGAACCAAAATTTGAACTCAAGGAGCGAATAACAGCAAAATGGGCTATGAAGAGGTTTATTGAGGGAGATACTATCTCAGTCTTGGACCCAAGATTGGATCAGACAGCTGCAAACACTTTGGCCCTGGAAAAGATACTTGAGCTAGCATTACAGTGCTTGGCTCCTCGTAGACAAAACAGGCCTAATATGAAGAGATGTGCTGAGATTCTTTGGGCCATCCGCAAGGATTATAGAGAGCTATCAGCTTCAAACTTTCGCTCATTGTCCACTACCCATAGGAGCACCTCAATGAGAGAGTGA 1323 0.4588 MTTPYVRRRDPSSDRRSTPDRTMRSPAYASSELSTSHHSTSSSSGSRNPLSAVARSFAGIFTGCFTPPEPNSSKSFVDSEEFKSSSVVSNTSRAGSQRARGSNRGISISLHNSIQGKEPGIVKYNMEEIIQVTRNFSPSFKIGQGGFGAVYKAKLLDGTIVAVKRAKKSIHEKHLGMEFQSEVQTLSRIEHLNLVKFYGYLEQGDERIIVVEYVPNGTLREHLDCIHGNVLDMASRLDIAIDVAHAITYLHMYIDHPIIHRDIKSSNILLTENFRAKVADFGFARQAPDSDSGMTHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVEIITGRRPIEPKFELKERITAKWAMKRFIEGDTISVLDPRLDQTAANTLALEKILELALQCLAPRRQNRPNMKRCAEILWAIRKDYRELSASNFRSLSTTHRSTSMRE. 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11117 440 CDD STKc_IRAK 142 411 - -
Seca3g11117 440 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 2 96 213 - -
Seca3g11117 440 Gene3D Transferase(Phosphotransferase) domain 1 214 434 - -
Seca3g11117 440 ProSitePatterns Protein kinases ATP-binding region signature. 142 168 IPR017441 GO:0005524
Seca3g11117 440 SUPERFAMILY Protein kinase-like (PK-like) 120 414 IPR011009 -
Seca3g11117 440 MobiDBLite consensus disorder prediction 1 48 - -
Seca3g11117 440 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 214 425 - -
Seca3g11117 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Seca3g11117 440 MobiDBLite consensus disorder prediction 23 48 - -
Seca3g11117 440 SMART serkin_6 136 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11117 440 ProSiteProfiles Protein kinase domain profile. 136 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11117 440 PANTHER OS01G0750732 PROTEIN 45 422 - -
Seca3g11117 440 Pfam Protein kinase domain 141 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11117 440 Gene3D Phosphorylase Kinase; domain 1 99 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11117 Seca-Chr3 258420334 258423799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11117 11 406 Trihelix Transcription Factor Family AT1G68690 37.321 6.98e-71 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Seca3g11117 PK_Tyr_Ser-Thr 2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11117 - - gmx:100792034 693.73