Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11114 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCACCTGCAAGGAACACCAGTGTATTACTATTACCCGCCAACTTTAGAAGAGCGCGAGTCTTTAACCTCTAATGATGGTGCGGTTACTTCACTCACTGCGGGATTACTGGTAGGCTTGAACCTGGAAGCATCCATACCTGATACTTACCAGCCCCCTCCTGCACCTCTGCCTTATGATACGGTCCTGGGAGGTCCAGCATCAACAGACTCTGAGTCAGGCAGAGAAACAGTTAGTGGTAGTAGCTTTGAAACTTTAATTACATGTGAAGATCTTGAAGAATCTGATTGTAAAGCTCAAGCTAAATCTGCACCTATATCTCCAAGGAAGGAAGAGCTGTCAAAATCAAATGAATCTCATGCATCACTGACAGAAGAAGAGGATGTCTGTCCAATTTGTCTTGAAGAATATGATGTTGAGAATCCTAAAACTCTGACAAAATGTGAACACCACTATCACCTGTCTTGTATTCTTGAGTGGATGGAAAGAAGTGACTCATGTCCTATATGTGATCAGGAGATGATATTTGACCAAGCACTGGACTAG 576 0.434 MGGCCCSARKPHLQGTPVYYYYPPTLEERESLTSNDGAVTSLTAGLLVGLNLEASIPDTYQPPPAPLPYDTVLGGPASTDSESGRETVSGSSFETLITCEDLEESDCKAQAKSAPISPRKEELSKSNESHASLTEEEDVCPICLEEYDVENPKTLTKCEHHYHLSCILEWMERSDSCPICDQEMIFDQALD. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11114 191 MobiDBLite consensus disorder prediction 118 132 - -
Seca3g11114 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 189 IPR013083 -
Seca3g11114 191 CDD RING-H2_AIRP1-like 136 184 - -
Seca3g11114 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 38 187 - -
Seca3g11114 191 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
Seca3g11114 191 SMART ring_2 140 180 IPR001841 -
Seca3g11114 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Seca3g11114 191 MobiDBLite consensus disorder prediction 109 132 - -
Seca3g11114 191 Pfam Ring finger domain 139 180 IPR001841 -
Seca3g11114 191 SUPERFAMILY RING/U-box 133 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11114 Seca-Chr3 258366775 258371299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11114 1 191 C3H Transcription Factor Family AT4G00335 59.686 4.06e-78 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11114 - - gmx:100792561 349.362