Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11113 ATGTCACTCCTTTTCCTTCTCTTTCTTCTTCTCTCTTCCTTCACTCTTACCCTTTCTTCTTCCACCACCACCATTCTTCTAACACCAAACTCCACCATTCCCAGCGACAACCGAACCTTCGAGCTTGGCTTCTTCAACATAGAAGACCAACCTCGCTGGTACCTCGCTATCCGCTTCACTTCCCTCCCATCCCCCAACATCATATGGCTCGCCAACCCCCTCAACCCTCTCACCAACCTCTCCGCTTCATCTCTCCAACTCACCCAAACCGGTCAATTACTCCTCACTCAATCCGGTTCAATCCTCTGGCGAACCAACAACATACAAGGTCAGGGTCAAGGCGTCAACTTGAACCTTCTAGAAAACGGAAACCTCCTTCTCCTCTCCCGAAACGGTGCCGTTTCTTGGCAGAGCTTCGATGAACCCACCGACACGTGGCTCCCTGGCATGAACCTCACCCGCTTCCGTTCCCTTCTCTCCTGGCGCACTCCAACGGACCCTTCCCCTGGGTTTTATTCCCTGCGGTTGAAACCACCGGCGTACGGTGAGTTCGAGTTAGTCTTTAACGGCACCGTTTCGTACTGGTCTACCGGGAACTGGTCTAACGGGTCGTTCGTCAACGTGCCGGAGATGACTATTCCCTACATTTACCGGTTCGATTTCGAGGACCCTTTTACCCCTACGGCGTCGTTTGGGTTCTCGGAGAGACCCTTGGAGAATGGTTTCAGGCCTCCTACTATGTTCCGTGTGGAGCCGTTTGGCCAGGTTCGGCAGTACACGTGGTCGACGCAGGCTGGTTCGTGGAACATGTTTTGGTCCAGACCTGATGGTGTTTGTCAGGTTCGTGGACTTTGCGGCAGCTTCGGAGTCTGCACCGGTGAAATGTCGAGGCTCTGTGAGTGTGTGAGTGGTTTCGTGCCTGTGGATGGGAATGGATGGGGTTCTGGTGATTACTCTCAAGGTTGTAAACGTAGTAAGAGCGCGTGTGAGGAGAGTGATGGTTTTGAAGATCTGGGTGCTGTGAGGTTTGCTGATGCCAATGTGAGTTTGTTTAGAGCTAAATCTAGAAGCTTCTGTGAGCGTGATTGTTTGCGTTCTTGTGGTTGTGTTGGTTTGTCTTTCGATGAAGGGAGTGGTGTGTGCAGGAATTTTTATGGGTCTGTTTTGGATTTTCAAAATTTAACTGCTTTGGATGGTGGGGGGTTGTATGTTAGGGTTCCCAGAAGGGGATCTGGGAGGAATGGGTTTAATCATAAGGCTCTCAGTGCTGCTATTGTTGGGTCGGTTGCGGTTTTGGGTGTGGTGGTGGTTACGTTGTTGGTGTTGGTGAAGAGGATGAAGGTGAAGAAGAGAAATAAAGGGTTGGAGGATGATGGGTTTGTTCCTGTGTTGAATTTGAAGGTGTTTTCTTATAAGGAGCTTCAATTGGCTACTAGGGGGTTTTCAGAGAAGGTTGGGCATGGTGGGTTTGGGACTGTGTTTCAAGGGGAGTTGAGTGATTCTTCTCTTGTTGCTGTGAAGCGTTTGGAGAGGCCAGGGGGTGGGGAGAAAGAGTTCAGGGCAGAGGTGTCTACAATTGGGAACATTCAGCATGTTAATCTTGTGAGGCTAAGAGGGTTTTGCTCTGAGAATTCTCATAGGCTTTTGGTTTATGAGTACATGCAAAATGGTGCCCTTAGTACTTATCTGCGCAAGGAGGGGCCTTGTTTGAGTTGGGATGTTAGGTTCAGGGTAGCAATTGGAACGGCTAAAGGCATAGCATATTTACATGAGGAATGTAGATGTTGTATTATACACTGTGATATCAAACCTGAGAACATCCTTTTGGATAGTGATTTCACTGCTAAAGTTTCTGATTTTGGATTGGCAAAGCTTATTGGCAGGGACTTAAGCAGGGTGTTGGCGACCATGAGGGGTACATGGGGTTATGTTGCTCCAGAGTGGATTTCTGGTGTGGCAATTACCACAAAAGCTGATGTTTACAGTTATGGAATGACATTGTTAGAACTAATTGGTGGTCGCCGGAATGTGGAGGCACCGCCATCAGCTGGTGGTAGGGAGAGTGGTTGTGAGACAGGAGAGAAGTGGTTCTTTCCTCCATGGGCTGCACAGCAGATAATTGAGGGTAATTTGATTGCTGTGGTGGATAAGAGGCTTGGAAATGTATATAACATTGAGGAGGCTAAGAGGGTTGCTTTGGTGGCAGTTTGGTGCATTCAGGATGATGAGGCAATGAGACCTTCCATGGGTATGGTGGTGAAAATGTTAGAGGGGTTAGTGGAGGTGACTGTTCCTCCACCTCCTAAGTTGCTACAAGCATTGGTTACTGGTGAGTCCTTCCATGGGGTCAAGGCTGATTCTGGCAATGGTGTATCCACTGGTGGCAGCTTATCTGGTGGCAACTTGGAACTGTCAACTGCTGATTCAGAATCATGTATAGGGGATGTTTTTTCCCCTATGGATGTCAATGTCAATGTTCGATAA 2484 0.4867 MSLLFLLFLLLSSFTLTLSSSTTTILLTPNSTIPSDNRTFELGFFNIEDQPRWYLAIRFTSLPSPNIIWLANPLNPLTNLSASSLQLTQTGQLLLTQSGSILWRTNNIQGQGQGVNLNLLENGNLLLLSRNGAVSWQSFDEPTDTWLPGMNLTRFRSLLSWRTPTDPSPGFYSLRLKPPAYGEFELVFNGTVSYWSTGNWSNGSFVNVPEMTIPYIYRFDFEDPFTPTASFGFSERPLENGFRPPTMFRVEPFGQVRQYTWSTQAGSWNMFWSRPDGVCQVRGLCGSFGVCTGEMSRLCECVSGFVPVDGNGWGSGDYSQGCKRSKSACEESDGFEDLGAVRFADANVSLFRAKSRSFCERDCLRSCGCVGLSFDEGSGVCRNFYGSVLDFQNLTALDGGGLYVRVPRRGSGRNGFNHKALSAAIVGSVAVLGVVVVTLLVLVKRMKVKKRNKGLEDDGFVPVLNLKVFSYKELQLATRGFSEKVGHGGFGTVFQGELSDSSLVAVKRLERPGGGEKEFRAEVSTIGNIQHVNLVRLRGFCSENSHRLLVYEYMQNGALSTYLRKEGPCLSWDVRFRVAIGTAKGIAYLHEECRCCIIHCDIKPENILLDSDFTAKVSDFGLAKLIGRDLSRVLATMRGTWGYVAPEWISGVAITTKADVYSYGMTLLELIGGRRNVEAPPSAGGRESGCETGEKWFFPPWAAQQIIEGNLIAVVDKRLGNVYNIEEAKRVALVAVWCIQDDEAMRPSMGMVVKMLEGLVEVTVPPPPKLLQALVTGESFHGVKADSGNGVSTGGSLSGGNLELSTADSESCIGDVFSPMDVNVNVR. 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11113 827 Gene3D Transferase(Phosphotransferase) domain 1 554 764 - -
Seca3g11113 827 Pfam D-mannose binding lectin 67 154 IPR001480 -
Seca3g11113 827 CDD STKc_IRAK 485 759 - -
Seca3g11113 827 Pfam S-locus glycoprotein domain 195 307 IPR000858 GO:0048544
Seca3g11113 827 ProSiteProfiles Protein kinase domain profile. 479 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11113 827 Gene3D Phosphorylase Kinase; domain 1 440 553 - -
Seca3g11113 827 Pfam Protein kinase domain 482 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11113 827 FunFam S-receptor-like kinase 5 554 765 - -
Seca3g11113 827 Gene3D - 15 139 IPR036426 -
Seca3g11113 827 CDD PAN_AP_plant 322 407 - -
Seca3g11113 827 SUPERFAMILY alpha-D-mannose-specific plant lectins 52 200 IPR036426 -
Seca3g11113 827 ProSitePatterns Protein kinases ATP-binding region signature. 485 507 IPR017441 GO:0005524
Seca3g11113 827 PANTHER OS07G0415500 PROTEIN 2 769 - -
Seca3g11113 827 ProSiteProfiles Bulb-type lectin domain profile. 18 140 IPR001480 -
Seca3g11113 827 SMART blect_4 24 142 IPR001480 -
Seca3g11113 827 FunFam Receptor-like protein kinase 4 441 553 - -
Seca3g11113 827 SUPERFAMILY Protein kinase-like (PK-like) 463 757 IPR011009 -
Seca3g11113 827 SMART serkin_6 479 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11113 827 ProSiteProfiles PAN/Apple domain profile. 329 407 IPR003609 -
Seca3g11113 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 597 609 IPR008271 GO:0004672|GO:0006468
Seca3g11113 827 PIRSF SRK 1 809 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11113 Seca-Chr3 258355414 258359914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11113 469 766 Receptor kinase-like Gene Family AT5G20050 47.588 1.05e-83 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca3g11113 Pkinase 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11113 - - lja:Lj0g3v0252549.1 1268.06