Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11112 ATGGCAGGGTGGTCGCTGCTCGACGTAGGAGTTAGCAGTGTCGTTGTTGGAGTGCAATACGACCAGGTTCGGTGCCGTTTTGAGGTGTTTCTTGCTGAGTTTTTGAGGGAGATCTGTCCCACGAGTCGGAGTTGCTTCCGTCCTTTTCCTCCAATGCTGGGTGATGGGCAGCGCGTGGATTTGTTCAAGCTGTTTACGGTGGTGAAGGGGAAAGGAGGGTACGACGCCGTTTGCAATGGAAAGTTGTGGGATTTGGTTGGGGAAGAATCTGGTTTGGGTGTGAGTGTCGGTTCGTCTGTGAAACTGGTTTATAGTAAATACTTGAGTGTTTTAGATGCATGGGTGAAGAAAGTTGCTGATAGTAAGGTACCTTTTGAGTGTGGTTTGGTGGATGATAGGGTTAAGTTCGCTAGGCGTTTGATGGAGTTGCAGGCTGAGGTGAAAGGGTTGTTGTCTGATCGTGCTGCTGATGAAAAGGAGTTAAAGGGTGAATCTGATGATGACTACCGGGGTGTGAGGAAGTTGTGTGGTACTAATGAGGTGAAAGGTTTGAATTTGGAATCTAATGGAGACCAAAAAGTCCAGAATGGAGGATGTTCTGATTCGGATATGCCAGACCGTGAGATGATGAATGAATCTGTTCTTGGAAACTTGTGTGAGGGTAATGATGCAATGGAAGAGTTTGATGGAGGGAAGGTGTCTGCGGAGTCTGTGTTGGTGGATGTATCTGATGCAATGAACAGCAGCAGAAGCACACCTGGATTGTCGATTGAAGGCAACAATGGTGGTGATGATAATAACGGTGTCTTGGTATTGGATTCTTCTGGTGGTGATGGAGGGAGTTCTGGTTATAAGAGGAAGAGAGAGTCTGTGTTTGATTTGCTGAGTTGGGTTACTCGCGTTGCGAAGGATCCTTGTGATCCTGCAGTTGGTTCCATGCCTGAAAAGTCCAAGTGGAAGTCTTATGGTAATCAAGAGGTCTGGAAGCAGGTTTTGCTGTTTCGTGAAGCTGTGTTTTTCAAAAAGCGTTTTGAGTCGAGCAGTGAACAGCATAATTGGCAGAGTCAGAAGATGCATCCTTGCATGTATGATGATCCCATTGCGACAACCTACAATCTTCGAGAGAGGTTGAAATGTGACAAGAAACTGTTATTTGGAAAATTGACATCAGGTGTACGAAGCTCTTCAGAATCATCTGTAGGAACGGAAGGAGATTCAGACAGAACACCAAGTCCTCATGCTGCAGATCGAGGTGAGAAACAGTCGCTTGATTCCTCCAATTCACATTCAGGTGTTGATAGATGTGGGACCATACGTATCCCTGTGGGGCCAATTCATCAAGCTTATGTACCACAGTGGACTGGCATGACTTCTGAAAGTGATTCTAAGTGGTTAGGGACCCAAATATGGCCACCGCAAAAAGTAACTTCTAGACTCCTTATTGAAAGGGACCCCATAGGAAAGGGAAGACAAGATGTATGTGGCTGCTCACAACCAGGTTCTGTTGAGTGTGTCAGATTCCACATTGCTGAGAAAAGGGGTAAAGTTAAGTTGGAATTAGGTGTGGCTTATTACCAATGGAATTTTGATAAGATAGGTGAAGATGTCAGGCGTTTTTGGACAAATGAAGATGAGAAAAAATTCAAGGATGTGATACAATCAAACTCTTCCTCATCTGAGACATATTTCTGGGATCATATTTTTAGAGCATTTCCTAAGAAGAGCCGGGCAGATTTAGTTAGCTACTACTTCAATGTCTTTCTTTTGCAACGCAGAGGGTACCAGAATAGGCATACTCCTGATGAAATTGACAGTGATGATGATGAATCAGAATCTGGTTTGAGGAATGTTTTTGGACATCAGACACAGAAATCACGTAGCTCCATCTTATTAACCCCCAAAAAGCCACAGACAAAGGGAAGAGATAGCAAGTGA 1935 0.4455 MAGWSLLDVGVSSVVVGVQYDQVRCRFEVFLAEFLREICPTSRSCFRPFPPMLGDGQRVDLFKLFTVVKGKGGYDAVCNGKLWDLVGEESGLGVSVGSSVKLVYSKYLSVLDAWVKKVADSKVPFECGLVDDRVKFARRLMELQAEVKGLLSDRAADEKELKGESDDDYRGVRKLCGTNEVKGLNLESNGDQKVQNGGCSDSDMPDREMMNESVLGNLCEGNDAMEEFDGGKVSAESVLVDVSDAMNSSRSTPGLSIEGNNGGDDNNGVLVLDSSGGDGGSSGYKRKRESVFDLLSWVTRVAKDPCDPAVGSMPEKSKWKSYGNQEVWKQVLLFREAVFFKKRFESSSEQHNWQSQKMHPCMYDDPIATTYNLRERLKCDKKLLFGKLTSGVRSSSESSVGTEGDSDRTPSPHAADRGEKQSLDSSNSHSGVDRCGTIRIPVGPIHQAYVPQWTGMTSESDSKWLGTQIWPPQKVTSRLLIERDPIGKGRQDVCGCSQPGSVECVRFHIAEKRGKVKLELGVAYYQWNFDKIGEDVRRFWTNEDEKKFKDVIQSNSSSSETYFWDHIFRAFPKKSRADLVSYYFNVFLLQRRGYQNRHTPDEIDSDDDESESGLRNVFGHQTQKSRSSILLTPKKPQTKGRDSK. 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11112 644 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 22 636 - -
Seca3g11112 644 SMART ARID_2 18 112 - -
Seca3g11112 644 SMART ELM2_2 440 491 IPR000949 -
Seca3g11112 644 ProSiteProfiles ARID domain profile. 21 116 IPR001606 GO:0003677
Seca3g11112 644 Coils Coil 140 160 - -
Seca3g11112 644 Gene3D - 17 124 IPR036431 GO:0003677
Seca3g11112 644 MobiDBLite consensus disorder prediction 615 634 - -
Seca3g11112 644 MobiDBLite consensus disorder prediction 392 406 - -
Seca3g11112 644 SMART bright_3 22 117 IPR001606 GO:0003677
Seca3g11112 644 CDD SANT 540 587 IPR001005 -
Seca3g11112 644 MobiDBLite consensus disorder prediction 598 644 - -
Seca3g11112 644 SUPERFAMILY ARID-like 26 121 IPR036431 GO:0003677
Seca3g11112 644 MobiDBLite consensus disorder prediction 409 423 - -
Seca3g11112 644 CDD ARID 26 108 - -
Seca3g11112 644 MobiDBLite consensus disorder prediction 392 434 - -
Seca3g11112 644 Pfam ARID/BRIGHT DNA binding domain 43 109 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11112 Seca-Chr3 258332000 258337525 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Seca3g11112 ARID 5.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11112 - - gsj:114390964 705.671