Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11102 ATGGCAGTGGCGAGTCGTAGTCCTATGGTTGCAACTCCACATGGGGTCAGTTGTGTGAACTCTGCTCATGATATTGGGCTTCATAGAATAAGAATGATGACCAGTAGTAGGAGGGAAAGTGTACAAGATCAGGCTAATATTAATCCAGATGTGATTATTAATGACACAATATATGTTGCTGTGGCAAAAGATGTGAAAGATAGCAAATTAAATCTGATATGGGCAATTCAGAACTCTCGAGGAAACAGAATATGCATCCTTCATGTTCACGTGCCAGCTACCATGATTCCCTTGATGGGTGCTAAATTTCCAGCAAGTGCACTGAAAGAGCAGGAAGTTGGAGCATACAGGGAAATTGAAAGGCAAGACATGCATAAGACTCTGGATGCCTATCTTCTTATCTGTCAAAAGATGGGGGTGAGGGCAGAGAAACTGCACATTGAAATGGATTGCATTGAAAAAGGAATTGTAGAACTCATCTCCCATCATAACATACAAAAGCTTGTAATGGGAGCAGCTTCTGATAAGTACCATTCTAGGAGAATGACGGATCTCAGATCTAAGAAAGCCATCTATGTATGTGAACAAGCTCCAGCTTCTTGTCACATACAGTTTATCTGCAAAGGCTACCTCATACACACAAGGGATGGCAATTTGGATAGAAGTAATGTAGAGGGCAAATCTCCTTTGGTGCAGCAAATTCCAAACTCTGAAGTTGGGCATTCCCCTAACTTGAGATCTCAATCTGTTTCATGGGGGCGAAATCAATGGGTGAAACTAGCTAATCCAGCTCAAGAGCTATTTCGTAGAGCAAGGTCTACCAATGAGGGACATGGAAGGAGCATTGCCTCTGTTTCTTCTTCAGATCAAGGATCTTCAACTACTACACCACAGAGCAAGTTGGGTTCTGATGAGTCAGATAGGGTGTCAAGATGGACTAATTCACCTTCAGTTTTCTCAATGTGCTCTGATAGTGAATCACCTTATTTGATTAGTGATGGCAGTGAGAATGCATTAGACTTTATCAGTTTGAGTGGCCTTTCTATTATTAAGGAGGAATATTCTCATCATTCATCACCTCCTAGTGTCCCGGATGGAGGAATGGAGGATAGTGTGTATGATCAACTTGAACAAGCAATGGCTGAGGCTGAGAATGCAAGAAGGGATGCATTTCAAGAAACTCTTAGGCGTGGCAAAGCTGAAAAAGATGGCATTGATGCTATACGCAGGACTAAAGCCGCTGAAATCTTGTATAAAGAAGAGCTGAAACTAAGGAAAGAGTTAGAAGAAGCACTAGTGAAAGCAAAAGAAGAAATTGATAATATGAAGAGCCAAAGAGACAAAGTTAATGAGGAACTCCAACTTGCACTACATCAGAAATCATCACTAAAAAATCAAATTGCATCAACTGAACTTACTATTAAGGATTTGGAGCAGAAGATTATGTCTGCTGTGGATCTATTACAAAGCTCCAAGAATGAACAAGATGACATCCAAATGCAGCGTGATAATGCATTGAAAGAGGCTGAGGAGTTAATGAGAAAATCACAAGGAGAGTTCTCAAGCACACATGTAGTGCCTCAACTCTTCTCAGAATTCTCTTTTTTAGAGATTGAAGAAGCAACAAGTAACTTCAATCCTTCCCTTAAGATTGGTGAAGGTGGATATGGAAGTATATTTAAAGGTACCCTGCGTCACACTGAGGTGGCTATAAAAATGTTGAACCCCAACAGCACACAAGGACCCTCTGAGTTTCAACAAGAGGTTGAGGTATTGAGCAAGTTAAGGCATCCTAATCTTATCACACTTATAGGAGCTTGCCCAGAGTCATGGACTCTTGTCTATGAATATTTACCCAATGGAAGCCTTGAAGATCGTCTCAACTGCAAGGATAACACACCTCCCTTATCATGGCAAACTCGGATTCACATTGCTGCAGAACTATGTTCTGCTCTTATTTTCCTCCATTCAAGTAAACCTCACAGCATAGTACATGGTGACTTAAAACCTTCCAACATTCTCCTTGATGCAAACCTTGTTAGCAAGCTTAGTGACTTTGGAATCTCTAGGATACTATCATGTGAAGAGGATTCAAGTAACAACATTTCACAGTTTTGGATGACTGTTCCAAAGGGAACATTTGTTTACATGGATCCTGAATTCCTTACTTCAGGTGAACTCACTCCAAAGTCAGATGTTTATTCATTTGGAATCATACTATTAAGATTGATAACTGGGAGACCAGCCTTGGGAATAATGAAGGAAGTGCAATATGCATTTCAAGGTGGAAAGCTGAAATCTCTGTTGGATCCTTTGGCTGGAGAATGGCCATTTGTGCAAGCTGAACAATTGGCTTGTTTGGCTTTGAGGTGTTGTGATATGAATAGGAAGAGCAGGCCAGACCTTCATTCAGATGTCTGGAAGATTCTGGAACCAATGAGGGATTCTTGTGGAGGCACAAACATCTTTGGACTTGGTTCTCAACAAGGACTCTGCCAACCTCCTTCATATTTTATTTGTCCAATCTTCCAGGAAGTTATGCAAGATCCACATGTGGCTGCAGATGGTTTCACCTATGAAGCTGAGGCTATAAGGGGATGGCTGGAAAGTGGTCATGACACTTCACCAAGGACAAATTCTAGGCTTTTACATCTCAATCTTGTTCCCAACCATACTCTTCGCTATGCAATTCAGGACTGGCTTCAAAGTCACTGA 2715 0.4122 MAVASRSPMVATPHGVSCVNSAHDIGLHRIRMMTSSRRESVQDQANINPDVIINDTIYVAVAKDVKDSKLNLIWAIQNSRGNRICILHVHVPATMIPLMGAKFPASALKEQEVGAYREIERQDMHKTLDAYLLICQKMGVRAEKLHIEMDCIEKGIVELISHHNIQKLVMGAASDKYHSRRMTDLRSKKAIYVCEQAPASCHIQFICKGYLIHTRDGNLDRSNVEGKSPLVQQIPNSEVGHSPNLRSQSVSWGRNQWVKLANPAQELFRRARSTNEGHGRSIASVSSSDQGSSTTTPQSKLGSDESDRVSRWTNSPSVFSMCSDSESPYLISDGSENALDFISLSGLSIIKEEYSHHSSPPSVPDGGMEDSVYDQLEQAMAEAENARRDAFQETLRRGKAEKDGIDAIRRTKAAEILYKEELKLRKELEEALVKAKEEIDNMKSQRDKVNEELQLALHQKSSLKNQIASTELTIKDLEQKIMSAVDLLQSSKNEQDDIQMQRDNALKEAEELMRKSQGEFSSTHVVPQLFSEFSFLEIEEATSNFNPSLKIGEGGYGSIFKGTLRHTEVAIKMLNPNSTQGPSEFQQEVEVLSKLRHPNLITLIGACPESWTLVYEYLPNGSLEDRLNCKDNTPPLSWQTRIHIAAELCSALIFLHSSKPHSIVHGDLKPSNILLDANLVSKLSDFGISRILSCEEDSSNNISQFWMTVPKGTFVYMDPEFLTSGELTPKSDVYSFGIILLRLITGRPALGIMKEVQYAFQGGKLKSLLDPLAGEWPFVQAEQLACLALRCCDMNRKSRPDLHSDVWKILEPMRDSCGGTNIFGLGSQQGLCQPPSYFICPIFQEVMQDPHVAADGFTYEAEAIRGWLESGHDTSPRTNSRLLHLNLVPNHTLRYAIQDWLQSH. 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11102 904 ProSitePatterns Protein kinases ATP-binding region signature. 551 572 IPR017441 GO:0005524
Seca3g11102 904 ProSitePatterns Serine/Threonine protein kinases active-site signature. 663 675 IPR008271 GO:0004672|GO:0006468
Seca3g11102 904 SMART serkin_6 545 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11102 904 Gene3D Phosphorylase Kinase; domain 1 516 617 - -
Seca3g11102 904 Coils Coil 369 393 - -
Seca3g11102 904 CDD STK_N 56 209 - -
Seca3g11102 904 FunFam receptor-like protein kinase FERONIA 507 617 - -
Seca3g11102 904 PANTHER OS02G0152300 PROTEIN 57 899 - -
Seca3g11102 904 CDD RING-Ubox_WDSUB1-like 835 890 - -
Seca3g11102 904 SUPERFAMILY RING/U-box 830 903 - -
Seca3g11102 904 MobiDBLite consensus disorder prediction 277 317 - -
Seca3g11102 904 SUPERFAMILY Protein kinase-like (PK-like) 519 803 IPR011009 -
Seca3g11102 904 Pfam Protein kinase domain 549 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11102 904 ProSiteProfiles Protein kinase domain profile. 545 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11102 904 SMART Ubox_2 837 900 IPR003613 GO:0004842|GO:0016567
Seca3g11102 904 Pfam U-box domain 835 904 IPR003613 GO:0004842|GO:0016567
Seca3g11102 904 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 833 904 IPR013083 -
Seca3g11102 904 Coils Coil 418 515 - -
Seca3g11102 904 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 68 175 - -
Seca3g11102 904 MobiDBLite consensus disorder prediction 273 317 - -
Seca3g11102 904 Gene3D Transferase(Phosphotransferase) domain 1 618 820 - -
Seca3g11102 904 ProSiteProfiles U-box domain profile. 833 904 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11102 Seca-Chr3 258185604 258195352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11102 52 904 U-box Gene Family AT2G45910 54.865 0.0 894
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Seca3g11102 Pkinase 7.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11102 - - gmx:100781596 1211.44