Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11082 ATGGGGATTCAGTGCTCTAGGCTCATCCCATGTTGTGTGAATTCACAAGTTAAGGCATCAGTTCTTGAAACTCCAGATGCTGAAAATGAGGATACAAATGAGGTCAGTAACTGGCCTACATTCCGTGAATTTACACTCGAGCAACTTAAGAATGCAACATCTGGTTTTGCTGTCGAGAATATTGTGTCTGAACATGGAGAGAAGGCTCCAAATGTTGTTTATAGAGGGAAGCTGGAGAATCAAATGAGGATTGCTGTTAAGCGGTTTAATAGAAATGCTTGGCCTGATTCTCGGCAGTTTTTGGGGGCTGATTGTAGCCTAAAATGTTTAGGTTTCATTTTTGCTGTGAAGCTAATGGTGCATCCAGTTGTGCTGGAAGAAGCAAGATCAGTTGGTCAGCTTCGTAACCAAAGATTGGCAAATTTGCTTGGCTGTTGTTGTGAAGGAGATGAGAGGTTGCTTGTGGCAGAGTATATGCCCAATGAAACACTTGCAAAGCACCTTTTCCATTGGGAAACACAACCTATGAAATGGGCAATGCGACTAAGGGTTGTTCTACATCTTGCACAAGCTCTAGAGTACTGCACAAGCAAAGGGCGTGCTCTCTACCATGACCTTAATGCATACAGAGTTCTATTTGATGAGGATGGTAATCCTAGGCTTTCGAGCTTTGGCCTTATGAAAAATAGCAGGGATGGGAAAAGTTATAGCACAAATTTGGCATTTACCCCTCCAGAGTATCTCAGAACTGGGAGAGTAACACCGGAAAGCGTAATATATAGCTTTGGTACTCTTTTGCTTGACCTTCTCAGTGGGAAGCATATTCCCCCAAGTCATGCCCTCGATTTGATTCGGGACAGAAATCTTCAGATGCTGACAGATTCTTGTTTGGAAGGACAGTTTTCTGATGATGATGGAACTGAACTGGTACGCTTGGCATCTCGATGTTTACAGTATGAACCTAGAGAACGGCCTAATCCAAAATCATTGGTGGCTGCTTTGGCTCCTCTTCAGAAGGAAACAGAGGTTCCTTCACATGTCTTGATGGGTATCCAACATATTGCTACTTTTACTTCATTGTCTCCACTTGGTGAAGCATGCTCAAGAAAGGACTTGACTGCCATACACGAAGTTCTGGAAAACATTGGCTATAAAGATGATGAAGGAGTGGCAAATGAGTTGTCATTCCAAATGTGGACTGATCAAATGCAGGACACGTTGAATTGTAAGAAAAAGGGCGATGTTGCTTTCCGGCAGAAAGATTTTAGACTAGCAATTGAGTGCTACACACAGTTCATTGATGCTGGAACAATGGTTTCTCCAACAGTCTATGCACGGCGCAGTTTGTGTTATCTCATTAGTGACATGCCTCAAGAAGCACTGAACGATGCAATGCAAGCACAAGTCATTTCCCCAGTATGGCACATTGCATCTTATCTTCAATCTGTTGCCCTTGCAACAGTTGGCATGGAGAATGAATCCCAAGTAGCTCTTAAAGAAGGTACAACACTGGAATCCAAGCGGACTGCAACTGCTAAACAAAAGTGA 1548 0.4309 MGIQCSRLIPCCVNSQVKASVLETPDAENEDTNEVSNWPTFREFTLEQLKNATSGFAVENIVSEHGEKAPNVVYRGKLENQMRIAVKRFNRNAWPDSRQFLGADCSLKCLGFIFAVKLMVHPVVLEEARSVGQLRNQRLANLLGCCCEGDERLLVAEYMPNETLAKHLFHWETQPMKWAMRLRVVLHLAQALEYCTSKGRALYHDLNAYRVLFDEDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSDDDGTELVRLASRCLQYEPRERPNPKSLVAALAPLQKETEVPSHVLMGIQHIATFTSLSPLGEACSRKDLTAIHEVLENIGYKDDEGVANELSFQMWTDQMQDTLNCKKKGDVAFRQKDFRLAIECYTQFIDAGTMVSPTVYARRSLCYLISDMPQEALNDAMQAQVISPVWHIASYLQSVALATVGMENESQVALKEGTTLESKRTATAKQK. 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11082 515 FunFam probable serine/threonine-protein kinase At5g41260 160 351 - -
Seca3g11082 515 ProSiteProfiles Protein kinase domain profile. 59 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11082 515 SUPERFAMILY Protein kinase-like (PK-like) 33 342 IPR011009 -
Seca3g11082 515 Pfam Protein tyrosine and serine/threonine kinase 124 333 IPR001245 GO:0004672|GO:0006468
Seca3g11082 515 Gene3D Transferase(Phosphotransferase) domain 1 160 352 - -
Seca3g11082 515 Gene3D Tetratricopeptide repeat domain 404 515 IPR011990 GO:0005515
Seca3g11082 515 Gene3D Phosphorylase Kinase; domain 1 29 158 - -
Seca3g11082 515 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 125 509 IPR045845 GO:0004672|GO:0009742
Seca3g11082 515 SUPERFAMILY TPR-like 405 506 IPR011990 GO:0005515
Seca3g11082 515 FunFam probable serine/threonine-protein kinase At4g35230 404 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11082 Seca-Chr3 257951847 257958348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11082 10 337 Glycoside Hydrolase AT3G07070 30.899 2.03e-38 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Seca3g11082 PK_Tyr_Ser-Thr 4.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11082 K14500 - gmx:100799260 927.161