Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11080 ATGGATCGAGGGGACCAAATGGCATTATCTGGGTCTGCATCTTACTATTTGCAGAGAGGAATACATGGTTCTGGAAACCAACCTGAATTGCATAATTCACCTAGTAGCATCCGTTCACTGTCTAATCCTAACCTTCCATTTCAATCAAGCATTGGGGGTGGTACCATTGGATCCACATTGCCATTAGAATCATCTGGAATTTCATCTCAATGTATCAATGTTGGTGCTCCTTCCGGGGAACCTGTCAAAAGGAAGAGAGGAAGGCCTAGAAAATATGGGCCTGATGGAGCTGTGTCATTGGCATTGACTCCAACACCAGCTACTCATCCTGGAACATTGACACAAGGCCAGAAACGGGGTAGAGGGCGCCCCCCTGGTTCTGGGAAGAAACAGCAGTTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGGATGGGTTTCACTCCTCATGTCATCACCATTGCAATTGGAGAAGACATTGCAACAAAAATCATGGCATTTTCTCAGCAAGGACCTAGAGCTATATGTATTTTGTCAGCCAATGGTGCTGTCTCTACTGTGACACTTCGTCAGCCTTCAACTTCAGGGGGCACTGTCACATATGAGGGGCGTTTTGAGATACTGTGCCTGTCAGGCTCTTACTTGCTTGCTGATAGTGGTGGCTCCCGCAATCGAACGGGTGGATTAAGTGTTTCCCTTGCAAGTCCTGATGGTCGTGTCATCGGTGGAGGAGTTGGTGGAGTGCTGATTGCAGCAAGTCTGGTTCAGGTGATAGTTGGGAGCTTCATGTGGGGTGGATCAAAGACAAAGAACAAGAAAAGGGAAGATTCTGAAGGCGCAGAAGTTGGTATAGAGTCAGATCATCAGGTTGTTCATAATCCAGTTGCAGTGAATAGCATTCCCCCAAATCAAAATCTTACTCCAACCTCATCTCTAAGTCCTTGGCCTGCATCGCGTCCATTGGACATGCGTAATTCCCATATTGACATTGATTTAATGCGCGGGTGA 1011 0.4698 MDRGDQMALSGSASYYLQRGIHGSGNQPELHNSPSSIRSLSNPNLPFQSSIGGGTIGSTLPLESSGISSQCINVGAPSGEPVKRKRGRPRKYGPDGAVSLALTPTPATHPGTLTQGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHVITIAIGEDIATKIMAFSQQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLLADSGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIAASLVQVIVGSFMWGGSKTKNKKREDSEGAEVGIESDHQVVHNPVAVNSIPPNQNLTPTSSLSPWPASRPLDMRNSHIDIDLMRG. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11080 336 Pfam Plants and Prokaryotes Conserved (PCC) domain 150 263 IPR005175 -
Seca3g11080 336 ProSiteProfiles PPC domain profile profile. 144 286 IPR005175 -
Seca3g11080 336 CDD DUF296 149 263 IPR005175 -
Seca3g11080 336 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 50 303 IPR039605 GO:0003680
Seca3g11080 336 MobiDBLite consensus disorder prediction 18 58 - -
Seca3g11080 336 MobiDBLite consensus disorder prediction 71 133 - -
Seca3g11080 336 Gene3D - 150 291 - -
Seca3g11080 336 MobiDBLite consensus disorder prediction 298 317 - -
Seca3g11080 336 SUPERFAMILY AF0104/ALDC/Ptd012-like 148 266 - -
Seca3g11080 336 SMART AT_hook_2 118 130 IPR017956 GO:0003677
Seca3g11080 336 SMART AT_hook_2 83 95 IPR017956 GO:0003677
Seca3g11080 336 MobiDBLite consensus disorder prediction 298 319 - -
Seca3g11080 336 FunFam AT-hook motif nuclear-localized protein 1-like 150 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11080 Seca-Chr3 257911738 257919068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11080 1 336 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 52.078 5.53e-88 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11080 - - gmx:100799791 554.673