Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11047 ATGAACAACAATAATAGAGCGAGGTACCCTCCCGGGATCGGTCTTGGACGAGGAGGTTTGAACCCTAACCTCAACCCAAACCTGAACCCTCAGTTTCAACCTAGGCCCCCTTACCAACAACAACCACCACCACCACAACAGCAGCACTATGTTCAAAAGCATTTGTTGCAGCAGCAGCAACAGCAACAACAGCAGCAGCAGCAGCAACAGTGGCTGAGAAGGGCGCAGTTGGGTGTTGCCGAATCCAATGTTGATGAGGTTGAGAAGACGGTGCAATCTGAAGCTGTTGACCCGAGTTCCCAAGATTGGAAGGCAAGACTAAAGATTCCGCCACCTGATACACGCTATAAGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAACGCGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAAACCTTCTCCCATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGATCAGGACAATAATGTTATTCAAGTTGTTATCCTTGTCCCAACTCGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAACATTTGAAAATTCAAGTTATGGTTACAACAGGTGGCACAAGCCTGAAAGATGATATAATGCGTTTGTATCAACCTGTTCACTTACTAGTAGGAACGCCAGGAAGAATATTAGATCTTGCCAAGAAGGGTGTTTGTATTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAACTTCTCTCCCCAGAGTTCCAACCTTCTATACAGCAGCTGATTCATTTTCTTCCTGCAAACCGTCAAATCCTGATGTTTTCGGCGACATTTCCTGTTACTGTAAAGGACTTCAAAGATAGGTATCTTCATAGACCATATGTTATTAACCTTATGGACGAGCTCACTCTGAAGGGTATTACACAATATTATGCTTTCGTGGAAGAGAGACAGAAAGTCCACTGCTTAAATACTCTTTTTTCTAAGCTGCAAATAAACCAGTCAATCATCTTCTGCAATTCAGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACGGAGCTTGGGTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGACCATCGTAATAGAGTGTTTCATGACTTCCGCAATGGTGCATGCCGAAATCTTGTTTGTACTGATCTTTTTACTAGGGGAATAGACATCCAAGCAGTAAATGTTGTTATTAATTTTGATTTTCCCAAGAATTCAGAAACTTATTTGCACAGGGTTGGTCGCTCAGGGAGGTTTGGCCACCTTGGTTTGGCAGTAAACTTGATCACTTATGAGGATCGCTTTAATTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCACCACACATTGATCAGGCAATTTATTGCCGGTGA 1506 0.417 MNNNNRARYPPGIGLGRGGLNPNLNPNLNPQFQPRPPYQQQPPPPQQQHYVQKHLLQQQQQQQQQQQQQQWLRRAQLGVAESNVDEVEKTVQSEAVDPSSQDWKARLKIPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIQQLIHFLPANRQILMFSATFPVTVKDFKDRYLHRPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR. 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11047 501 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 274 282 IPR000629 -
Seca3g11047 501 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 63 500 - -
Seca3g11047 501 MobiDBLite consensus disorder prediction 45 61 - -
Seca3g11047 501 FunFam ATP-dependent RNA helicase DDX6 108 331 - -
Seca3g11047 501 CDD SF2_C_DEAD 339 468 - -
Seca3g11047 501 Gene3D - 333 501 IPR027417 -
Seca3g11047 501 MobiDBLite consensus disorder prediction 1 61 - -
Seca3g11047 501 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 158 328 IPR014001 -
Seca3g11047 501 Pfam Helicase conserved C-terminal domain 353 459 IPR001650 -
Seca3g11047 501 Gene3D - 112 332 IPR027417 -
Seca3g11047 501 MobiDBLite consensus disorder prediction 85 118 - -
Seca3g11047 501 Pfam DEAD/DEAH box helicase 152 316 IPR011545 GO:0003676|GO:0005524
Seca3g11047 501 CDD DEADc_DDX6 129 329 - -
Seca3g11047 501 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 127 155 IPR014014 GO:0003724
Seca3g11047 501 SMART ultradead3 146 342 IPR014001 -
Seca3g11047 501 MobiDBLite consensus disorder prediction 29 44 - -
Seca3g11047 501 FunFam ATP-dependent RNA helicase DDX6 332 501 - -
Seca3g11047 501 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 338 498 IPR001650 -
Seca3g11047 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 481 IPR027417 -
Seca3g11047 501 SMART helicmild6 378 459 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11047 Seca-Chr3 257562880 257572900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11047 127 498 Eukaryotic Initiation Factors Gene Family AT3G19760 38.235 3.00e-94 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11047 K12614 - aew:130783804 843.958