Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11046 ATGGGAAGGACACCCTGTTGTGACAAGATGGGGTTGAAGAAAGGTCCTTGGACTGCTGAAGAAGATGAGCTTCTTATCAATTATATAAAGAAGAATGGTGGTCATGGAAGCTGGCGTTCTCTCCCCAAGTTAGCAGGTCTTCTTCGTTGTGGTAAGAGTTGCAGGCTAAGATGGACGAACTACCTCAGACCTGATATTAAACGTGGCCCCTTTACACCTGAGGAAGAAAAACTAGTCATACAGCTTCATGCCATCCTTGGAAATAGGTGGGCTGCTATTGCATCTCAGCTACCAGGAAGAACAGACAATGAGATCAAGAATTTATGGAATACCCATTTGAAAAAACGTCTCATTTGCATGGGACTTGACCCACAAACCCATGAACCAATAGCCTCTTCACGTTACCCAATTGACAAGGCACAAACATCAATTGCCACACGCCACATGGCCCAATGGGAAAGTGCAAGACTTGAAGCAGAGGCTAGACTCTCAAGGGAATCATCTTTGTTCAACAACAACAATCCTTCTTTTGCAAACAACAAAACTGATTCTGACTATTTCCTACGCATTTGGAACTCTGAAGTTGGACAATCTTTTCGTGCCATTCATCATAAATCAGATGACAAAACTATGTGCCAAAGTCCAATGTCTCCAGGGTCATCTTCCAACAAATGTGGAGGATCATTGTCAGCTACTACTACAACAGATTTTGCTTCCAACCCAGTTGAATCATCAACACCAGCAAGCAATGTGAAAGAAGATTTTGAGTGGAAAAACACAAAGTCATTGATTCATGGCTCTGATTCATCAAGCTCTAATGACCTTGAAGACTCATCTGACACTGCATTACAGCTCTTGTTAGATTTTCCTTTAAACAATGACATGAGTTTCTTAGAGTGA 900 0.42 MGRTPCCDKMGLKKGPWTAEEDELLINYIKKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLVIQLHAILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLICMGLDPQTHEPIASSRYPIDKAQTSIATRHMAQWESARLEAEARLSRESSLFNNNNPSFANNKTDSDYFLRIWNSEVGQSFRAIHHKSDDKTMCQSPMSPGSSSNKCGGSLSATTTTDFASNPVESSTPASNVKEDFEWKNTKSLIHGSDSSSSNDLEDSSDTALQLLLDFPLNNDMSFLE. 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11046 299 Gene3D - 70 117 - -
Seca3g11046 299 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 254 - -
Seca3g11046 299 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Seca3g11046 299 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Seca3g11046 299 FunFam MYB transcription factor 70 117 - -
Seca3g11046 299 MobiDBLite consensus disorder prediction 211 253 - -
Seca3g11046 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Seca3g11046 299 SMART sant 13 64 IPR001005 -
Seca3g11046 299 SMART sant 67 115 IPR001005 -
Seca3g11046 299 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Seca3g11046 299 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Seca3g11046 299 Gene3D - 11 68 - -
Seca3g11046 299 CDD SANT 16 62 IPR001005 -
Seca3g11046 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Seca3g11046 299 SUPERFAMILY Homeodomain-like 10 109 IPR009057 -
Seca3g11046 299 MobiDBLite consensus disorder prediction 209 253 - -
Seca3g11046 299 CDD SANT 70 113 IPR001005 -
Seca3g11046 299 FunFam Myb transcription factor 11 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11046 Seca-Chr3 257554687 257557930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11046 1 299 MYB Transcription Factor Family AT3G61250 65.574 7.39e-128 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g11046 Myb_DNA-binding 5.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11046 K09422 - gmx:100816569 444.891