Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11039 ATGTTCAGTGGAACCCTGGACAAATGCTCAGTTTGCACAAAAACAGTCTATCCACTGGAAAAGGTGACATTGGAAGGGGAGTGCTACCACAAGACTTGCTTTAGGTGTGCTCATGCAGGGTGTCCTCTGACACATTCAAACTATGCTGCACTTGATGGTGTCCTCTACTGCAGGGTCCATTTTGCACAACTTTTCATGGAGAAAGGGAGCTACAGCCATGTACTCAAAGCTGCTGCACACAAGAGGACTGGTTCTTCTACACCTCCTGAATCAATTGAACTGCCAGCAGCAGCAGCATCTGAGGAACAAAATGAAGACACATCTTGA 327 0.4679 MFSGTLDKCSVCTKTVYPLEKVTLEGECYHKTCFRCAHAGCPLTHSNYAALDGVLYCRVHFAQLFMEKGSYSHVLKAAAHKRTGSSTPPESIELPAAAASEEQNEDTS. 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11039 108 PANTHER OS06G0237300 PROTEIN 5 104 - -
Seca3g11039 108 Gene3D Cysteine Rich Protein 5 73 - -
Seca3g11039 108 FunFam LIM domain and actin-binding 1 3 73 - -
Seca3g11039 108 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 35 74 - -
Seca3g11039 108 ProSiteProfiles LIM domain profile. 7 67 IPR001781 -
Seca3g11039 108 Pfam LIM domain 9 64 IPR001781 -
Seca3g11039 108 SMART lim_4 8 60 IPR001781 -
Seca3g11039 108 MobiDBLite consensus disorder prediction 81 108 - -
Seca3g11039 108 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 2 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11039 Seca-Chr3 257491276 257493116 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca3g11039 LIM 2.5e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11039 - K09377 gmx:100800234 198.364