Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11038 ATGAAGTTCTGCTTTTCAAGATTTCTCCGTTTCATTTCCTCTTTTCAGCTGCCCTGTTGTTCCCATCCAATCTCAATATACTGTGTCTCAAGAAAAAGTAATTTGAACGATGATGGTGGAAAATCCGTGTCAGAGGCAAAAGATCCTCCACAAACAAAGCACGATGTTTTTGTTAGCTTCAGGGGTGAGGTCCGTGACGGTTTTCTCAGCCACTTGAAAAAGGCTTTTCATCAGAAGAAAATAAAAGCCTTTGTAGATGAACAAATTCCAAGGGGAGATGAAATTTCGCCATCACTTGTTGAAGCAATTGAGGGATCATTCATTTCCTTGATCATATTCTCACCAGATTTTGCTTCTTCAAGTTGGTGTTTGGAAGAAGTTGTCAAAATACTTGACTCCAGAGACAAGTACCAACGGATCGTGATACCTGTCTTCTACCATGTAGATCCCACATGTGTACGCCATCAAACGGGGAGTTATGAAAATTCATTTGCTAAGCATGGAAAAAAATATGATCCCAGCAAGGTGCAAATTTGGAGAGATGCTTTGAAAAAATCTTCCCATCTAGCAGGAATTGAGTCTAAACGTCGCAGAAATGATGCTGAGTTGGTTGAAGAAGTCGTCAATCTTTTGTTGGAGAGATTGCGTAAATACCCACTTAACTCAAAAGGACTTGGTCACTCAACAAGATTTATTGGAATTGACAAACAAATGGCACATTTAGAAAAGTTGTTACGTCAAGAATCAGATCGCCCTCTTGTTATTGGAATATGGGGTATGGGCGGTATTGGCAAGACAACCATTGCAAGTGAAGTATGTAACAAACTTCAGTCAGAATATAAAGGTTGTTGTTTTTTGGATGATGTAAGAGAAAAATCATCAAAAGATGGAATGAAATCTTTGAAAAAAACGCTCTTTTCTGAATTATTAGGAGAAGATGCGAAAATTGACACACCAATTGGGCCGCCCAATGATATTAAGAGAAGGATTCATGGTATGAAGGTTCTTATTGTTCTTGATGATGTGAATGATGCAGACCACATAGAAATATTATTATCTGAAGCTCTTGATCGGCTTGGATCAGATAGTAGAGTAATTGTAACTACTAGAGAAAAGCAAGTGCTTAGCACTTACTGCGAAGCTGATGATATACACAAGGTTGGAGAGTTGAGTTCTAATGAAGCACTTGAGCTTTTCAATTTGAATGCCTTTAGCCAAAGTCATTTGGAAAAGGAGTATCATGAGCTATCAAAGAGGGTGGTTCATTATGCCAGTGGCGTTCCATTGGTTCTTAAAGTTTTGGGACGTCTTCTTCGTGGAAAAGGCAAGGAAGTATGGGAAAGTCAGCTAAACGAGCTTAAAAAAATGCCAATAAAAAAAGTTTACAATGTAATGAGACTGAGTTATGATGATCTAGATCACAAAGAGAAAAAGATTTTTTTAGATCTTGCATGTTTCTTCATAGGATCGAGATTAGAAGTGAGTGACATAAAAAATTTATTGAGAGACGGTGAAAGTGATAATTCAGTGACTGTTGTGTTTGAAAGGTTGAAAGATAAAGCTCTTGTAACTTTTTCTGCGAATGATTGTGTATCTATGCATGATATCATACGAGAAATGGCTTGGGAGATTGTTCGCGAAGAATCTAGTGAAGACCCTGGAAGTCGTAGTCGGTTATGGGATGAAGATGACTGTAGGGAAGTGCTGGAAAATGACAAGGGGACTGAGGCCATCAGAAGCATGTATGTGTCAACTTCATCTTTGAAGTTAAGCCCCCATGCATTTGCTAAGATGAGCAAACTACAATTTTTGGAATTCGAAGCCAACTGCGATTGTCCTCAAGGGCTTCAATCTTTGTCATCTGAACTAAGATATCTTAGTTGGTTTAATTACCCTCAGGCAACCTTGGCTCATAAATTTTGTGCGGAAAATCTTGTTATATTGGACTTGTCATATAGCAAGATAATAAAACTTTGGGATGGAGTGCAGAATCTCGTGAATTTAAAGCAAGTTAAACTCGGTAGTTGCTATAACTTGTTAGAGCTGCCAGACTTTTCCAAAGCCACAAATCTTGAATTACTAGAAGCAAGAGATTGTAGGGAGTTGTCAGGGGTGCACTCATCTATTTTCTCTCTCAACAAGCTCAATACATTGGATCTTTCTTGGTGCGGTAAAATTGCCACACTTACCAGTGATACCCATTTGAGCTCCCTCAGTTATCTCAACTTTGGTTACTGTTGTAATCTAAGGGAATTCTCAGTGACATCAGAGAATATGAAAAAACTGGATTTAACATACGTGCAGGTCCAAGCATTGCCCTCATCATTTGAACATCAAAGCAAGCTTGAAATCCTATGTCTAAGAGGCAGTGACATTGAGGAGTTACCTTCATGCATCAAGAAACTTACAAGATTGCAATATCTAGACATAAGTCATTGCTTTCGGCTTGAGACAATACCAGAGCTTCCCCCCTCCCTTCAAACTCTCCTTGCTGGATGTTACTATAGAGGACAACTGCAGACTGTATGCTTCCCTAGGGTTGGTGAACAATTGAAGGAAAATAGGAAAAGGGTTCAGTTCTGGAATCGCTGA 2592 0.3897 MKFCFSRFLRFISSFQLPCCSHPISIYCVSRKSNLNDDGGKSVSEAKDPPQTKHDVFVSFRGEVRDGFLSHLKKAFHQKKIKAFVDEQIPRGDEISPSLVEAIEGSFISLIIFSPDFASSSWCLEEVVKILDSRDKYQRIVIPVFYHVDPTCVRHQTGSYENSFAKHGKKYDPSKVQIWRDALKKSSHLAGIESKRRRNDAELVEEVVNLLLERLRKYPLNSKGLGHSTRFIGIDKQMAHLEKLLRQESDRPLVIGIWGMGGIGKTTIASEVCNKLQSEYKGCCFLDDVREKSSKDGMKSLKKTLFSELLGEDAKIDTPIGPPNDIKRRIHGMKVLIVLDDVNDADHIEILLSEALDRLGSDSRVIVTTREKQVLSTYCEADDIHKVGELSSNEALELFNLNAFSQSHLEKEYHELSKRVVHYASGVPLVLKVLGRLLRGKGKEVWESQLNELKKMPIKKVYNVMRLSYDDLDHKEKKIFLDLACFFIGSRLEVSDIKNLLRDGESDNSVTVVFERLKDKALVTFSANDCVSMHDIIREMAWEIVREESSEDPGSRSRLWDEDDCREVLENDKGTEAIRSMYVSTSSLKLSPHAFAKMSKLQFLEFEANCDCPQGLQSLSSELRYLSWFNYPQATLAHKFCAENLVILDLSYSKIIKLWDGVQNLVNLKQVKLGSCYNLLELPDFSKATNLELLEARDCRELSGVHSSIFSLNKLNTLDLSWCGKIATLTSDTHLSSLSYLNFGYCCNLREFSVTSENMKKLDLTYVQVQALPSSFEHQSKLEILCLRGSDIEELPSCIKKLTRLQYLDISHCFRLETIPELPPSLQTLLAGCYYRGQLQTVCFPRVGEQLKENRKRVQFWNR. 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11038 863 PRINTS Disease resistance protein signature 254 269 - -
Seca3g11038 863 PRINTS Disease resistance protein signature 329 343 - -
Seca3g11038 863 PRINTS Disease resistance protein signature 424 438 - -
Seca3g11038 863 PRINTS Disease resistance protein signature 710 726 - -
Seca3g11038 863 SUPERFAMILY "Winged helix" DNA-binding domain 459 570 IPR036390 -
Seca3g11038 863 Gene3D - 51 219 IPR035897 -
Seca3g11038 863 SMART till_3 53 189 IPR000157 GO:0007165
Seca3g11038 863 ProSiteProfiles TIR domain profile. 52 215 IPR000157 GO:0007165
Seca3g11038 863 Gene3D Ribonuclease Inhibitor 758 838 IPR032675 -
Seca3g11038 863 Pfam Leucine Rich Repeat 644 663 IPR011713 -
Seca3g11038 863 SUPERFAMILY L domain-like 586 831 - -
Seca3g11038 863 Pfam TIR domain 53 221 IPR000157 GO:0007165
Seca3g11038 863 SUPERFAMILY Toll/Interleukin receptor TIR domain 45 191 IPR035897 -
Seca3g11038 863 Pfam NB-ARC domain 241 469 IPR002182 GO:0043531
Seca3g11038 863 Gene3D - 225 384 IPR027417 -
Seca3g11038 863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 483 IPR027417 -
Seca3g11038 863 FunFam Disease resistance protein (TIR-NBS-LRR class) 50 217 - -
Seca3g11038 863 Gene3D - 389 473 IPR042197 -
Seca3g11038 863 Gene3D Ribonuclease Inhibitor 569 757 IPR032675 -
Seca3g11038 863 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 54 823 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11038 Seca-Chr3 257481738 257486102 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11038 54 821 WRKY Transcription Factor Family AT4G12020 31.274 1.83e-90 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11038 - - aprc:113850949 912.524