Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11035 ATGCGAAGAATGAGGCCTACAATGTTGCTTAGGGCTCTGAACCAGCAGTTTATTGGAATTCTTGGTGACACTGCAAATGCTGTCACTAAGAAGCAGCCACCGCCTCCTCCTGCAGTTTCGCGCAAACCGGCCTTCATTGATGCATTCCTGTACAAGATGAAAAAGAACCGAAATCTTCTGATGAACAAGACTATTTGGTCAAGGAGATCCACTATCTTACCGGAATTTGTTGATTCCACTGTGAAGATTTACAATGGGAAAACCACCGTTCGATGTAAGATCACTGAGGGAAAAGTGGGTCATAAGTTTGGAGAGTTTGCTCTCACCAGGAAACGCAAAATCAAAGAACAAGCCAATGCCAAAAATGTTAAACAACTTAAGAAAAAGAAGTGA 393 0.4249 MRRMRPTMLLRALNQQFIGILGDTANAVTKKQPPPPPAVSRKPAFIDAFLYKMKKNRNLLMNKTIWSRRSTILPEFVDSTVKIYNGKTTVRCKITEGKVGHKFGEFALTRKRKIKEQANAKNVKQLKKKK. 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11035 130 Gene3D 30s Ribosomal Protein S19; Chain A 38 125 IPR023575 GO:0003735|GO:0005840|GO:0006412
Seca3g11035 130 SUPERFAMILY Ribosomal protein S19 41 113 IPR023575 GO:0003735|GO:0005840|GO:0006412
Seca3g11035 130 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 35 115 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca3g11035 130 Pfam Ribosomal protein S19 49 113 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca3g11035 130 ProSitePatterns Ribosomal protein S19 signature. 85 109 IPR020934 GO:0003723
Seca3g11035 130 PRINTS Ribosomal protein S19 family signature 97 112 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca3g11035 130 PRINTS Ribosomal protein S19 family signature 85 97 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca3g11035 130 PRINTS Ribosomal protein S19 family signature 65 84 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca3g11035 130 Hamap 30S ribosomal protein S19 [rpsS]. 9 123 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca3g11035 130 FunFam Ribosomal protein S19, mitochondrial 37 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11035 Seca-Chr3 257420995 257422307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11035 68 111 Cytoplasmic Ribosomal Protein Gene Family AT5G09490 38.636 7.44e-06 41.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11035 K02965 - gmx:100782150 185.652