Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11019 ATGGCACAGGTAGAAAAGTTGTTACGTCAAGAATCAGAACACCCTCTTGTTATTGGAATATGGGGTATGGGCGGTATTGGCAAGACAACCATTGCAAGTGAAGTATGTAATAAACTTCGGTCAGAATATAAAGGTTGCTGTTTTTTGGATAATGTAAGAGAAAAATCATCAAAAGATGGAATTAAATCTTTGAAAAAAGCGCTCTTTTCTGAATTATTAGGAGAAGATGCGAAAATTGACACACCAAATTGGTTGTCCAATGATATTAAGAGAAGGATTCATGGTATGAAGGTTCTTATTGTTCTTGATGATGTGAATGATTCGGATCACATAGAAAACTTGTTATCTGAAGCTCTTGATTGGCTTGGATCAAACAGTAGAATAATTGTAACTACTAGAGATAAGCAAGTGCTCAGTACTGTTTGCAAAGCTGATGATATACACAAGGTTGGAGAGTTGAGTTCTAATGAAGCACTTGAGCTTTTCAATTTGAATGCCTTTAACCAAAGTCATTTGAAAAATGAGTATTGTGAGCTATCAGAGAGGGTGGTTTGGGACGTCTTCTTCGTGAAAAAGACAAGGAAAAATGGCTTGGGAAATCGTTCGCCAAGAATCTATTGTCGGTTATGGGATCCTGATGACTGTAGGGAAGTGCTGGAAAATGACAAGGGGACTGAGGCCATCAGAAGCATACGTGTGAGGAAACTACAATTTTTGAAGTTAAGCCCCCATGCATTTGCTAAGATGAGCAAACTACAATTTTTGGATTACCATGGCTCTTTAGATTGTCCTCAAGGGCTTCAATCTTTGTCATCTGAACTAAGATATCTTCGTTGGATTGATGACCCTCAGGTAACCTTATTGCCACAGAATTTTTCGGCTGAAAAACTTGTTATATTGGACTTGTCATCTAGCAAGATAATAAAACTTTGGGACGGAGTGCAGTTAAACTCCATTATTGTGATAACTCCAGACTTTTCCAAAGCCACAAATCTTGAAGTACTAAAAGCCAAAGATTGTGAGAAGTTGTCAGGGGTGCATTCATCTATTTTCTCTCTCAACAAGCTCAATACATTGGATCTTTCTTGGTGCGATAAAATTGCCACACTTACCAGTGATACCCATTTGAGCTCCCTCAGTTATCTCAAGCTTGGTAACTGTTATAGTCTAAGGGAATTCTCAGTGACATCAGAGAATATGAAAAAACTGGATTTAAGTTGGACGAAGGTCAGAGCATTGCCGTCATCATTTGAACATCAAAGCAATCTTGAAATCCTATGTCTAAGAGGCAGTGACATTGAGGAGTTACCTTCATGCATCAAGAAACTTACAAGATTGCAATATCTAGACATAACAGATTGCAAACGGCTTCAGACAATACCAGAGCTTCCCTCCTCCCTTCAAACTCTCCTTGCTGGATCTTTGTTTAGAGGACAACTGGAGACGGTATGCTTCCCTACGGTTGCTGAACAATTGAAGGAAAATAGGAAAAGGGTTCAGTTCTGGAATCACTTGAATTTGGATGAACAGTCTCTCATGGATATTGAGTTGAATGCGCGAATCAACGTGATGAAATTTGCACACCAACATCTATCTGCACCAAAACATGATTCTGATGAAGTTGTGTACTACGTGTATCCAGGAAGCAGAGTTCCAGAGTGGTTGGAGCATAGAACAATGGATATGTTTACTCTATCTTAG 1701 0.3898 MAQVEKLLRQESEHPLVIGIWGMGGIGKTTIASEVCNKLRSEYKGCCFLDNVREKSSKDGIKSLKKALFSELLGEDAKIDTPNWLSNDIKRRIHGMKVLIVLDDVNDSDHIENLLSEALDWLGSNSRIIVTTRDKQVLSTVCKADDIHKVGELSSNEALELFNLNAFNQSHLKNEYCELSERVVWDVFFVKKTRKNGLGNRSPRIYCRLWDPDDCREVLENDKGTEAIRSIRVRKLQFLKLSPHAFAKMSKLQFLDYHGSLDCPQGLQSLSSELRYLRWIDDPQVTLLPQNFSAEKLVILDLSSSKIIKLWDGVQLNSIIVITPDFSKATNLEVLKAKDCEKLSGVHSSIFSLNKLNTLDLSWCDKIATLTSDTHLSSLSYLKLGNCYSLREFSVTSENMKKLDLSWTKVRALPSSFEHQSNLEILCLRGSDIEELPSCIKKLTRLQYLDITDCKRLQTIPELPSSLQTLLAGSLFRGQLETVCFPTVAEQLKENRKRVQFWNHLNLDEQSLMDIELNARINVMKFAHQHLSAPKHDSDEVVYYVYPGSRVPEWLEHRTMDMFTLS. 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11019 566 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 203 479 IPR044974 GO:0006952
Seca3g11019 566 Pfam NB-ARC domain 5 175 IPR002182 GO:0043531
Seca3g11019 566 PRINTS Disease resistance protein signature 351 367 - -
Seca3g11019 566 PRINTS Disease resistance protein signature 17 32 - -
Seca3g11019 566 PRINTS Disease resistance protein signature 92 106 - -
Seca3g11019 566 SUPERFAMILY L domain-like 230 474 - -
Seca3g11019 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 184 IPR027417 -
Seca3g11019 566 Gene3D Ribonuclease Inhibitor 226 397 IPR032675 -
Seca3g11019 566 Gene3D Ribonuclease Inhibitor 398 540 IPR032675 -
Seca3g11019 566 Gene3D - 1 149 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11019 Seca-Chr3 257249073 257251292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11019 189 470 WRKY Transcription Factor Family AT4G12020 32.797 2.85e-28 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11019 - - aprc:113850949 364.385