Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11017 ATGGTTGAGGGTGAGGGTATGAAGTCTAATGAAAAGAAAAAGAAAAAGAAGAAGAAGAAGAACAAGGACAAAGCTGCTAGAGAAAACCTGAAAGTTGAGCAGTCAGATACTGGTCTAGATACTGATATGAAGGATGATATTGGGGAAGAGAACATTGATGAAACTGAATTTTATGCATGGAATGAGTTGAGGCTTCATCCTCTCCTAATGACAGCGATATACAAGCTTGGCTTCAAGGAACCAACACCAATACAGAAAGCTTGTATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTGCAGAGACAGGATCTGGTAAAACACTCGCATTTGGTTTGCCGATTTTGCAACGCATTTTGGAGGAGCGAGAGAAGGCTTCAAAGATGGCTGATGAAAAGGCTGAAGAAGCTGAAAAGTATGCTCCTACAGGCATTTTGAGGGCTCTTATTATTGCTCCGACTAGAGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCAGTAGCCAAGTATATTAATGTTAGGGTGACCCCTATAGTTGGAGGGATTTTAGCAGAAAAGCAGGAGAGACTTTTAAAAGCAAAGCCTGAGATTGTGGTTGGGACTCCAGGGAGGTTATGGGAACTTATGTCAGCTGGAGAAAAACATCTAGTTGAGTTACATTCATTGTCTTTTTTTGTGCTTGATGAGGCTGATAGAATGGTGCAAAATGGTCATTTTAAGGAGTTGCAGTCAATAATTGACATGCTTCCCATGTCCAATATCTCCGCTGAAGATAATTCACAACACGCACAAAGTTGTGTTACAGTTTCTAGCTACCAAAGAAAGAAAAGGCAAACTCTTGTTTTTTCAGCAACTGTTGCACTGTCTGCTGATTTTCGCAAGAAGCTGAAGCGTGGTTTGATTCAACAAAAGCAATCATTAACAAATGGATTGAATTCTATTGAGACTCTTTCTGAGCGAGCAGGGATGAGAACCAATGCTGCAATTATTGATCTTACTAATCCATCAATATTAGCAGCTAAACTTGAGGAATCATTTATTGAATGCAGGGAGGAAGATAAAGATGCATATGTGTATTATATTCTGACTGTCCATGGACAAGGCCGCACTATAGTTTTCTGTACGTCAATTGCAGCTTTGCGCCATATTTCTTCCATATTGCGCATTCTTGGCATTAATGTCTGGACTCTTCATGCCCAAATGCAGCAGCGAGCACGTTTAAAGGCCATGGATCGCTTTCGTGAAAATGAAAACGGCATACTTGTTGCTACAGATGTTGCTGCAAGAGGTCTTGACATTCCTGGTGTTAGAACTGTTGTCCACTATCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCTAGAGCTTCTGCAGAAGGTTGTAGCATTGCTTTAATCTCACCAAAAGATACATCAAAGTTTGCTTCATTGTGCAAGTCATTTTCAAAGGATTCCTTTCAGCGGTTTCCTTTAGAGAATTCATACATGCCAGAGGTCCTAAAAAGATTGTCTCTTGCACGTCAAATAGACAAGATAACAAGGAAGGATTCCCAGGAGAGGGCTGAGAAAAGTTGGTTTGATCGGAATGCTAACTCAGTGGAATTAGTTACAGAAAATTATGACAGTGAGGAGGAACAAGTTAACAAATATAAGCAAATGAAAAACAGCTCTAAACAATTGAAGAAATTGCAGACGGAGCTCAACATGCTGATTTCACGTCCTTTACAATCAAGAACATTTTCGCATCGATATTTAGCAGGGGCTGGTGTCACACCCCTCATGCAGGAACAATTGCAACAATTAGCAAGGCAAAAACTAAGTGATCATCGCAAAAAGGGAAAAATGGTTGTGATTGGTCAAGAATGTGTGGAAGCGCTTCAGGCACTTCGAAGTGCTGGTGAAGAGGTGCGCATGGATTTAAAGGATTTGGCAGGAAAACAGAGAAATATGGCGAATTTAAAAAGAAAAAGAAAAGAGGAGAAAAAACGTTTGCGTGATCAGCGAAGAAAGCAGAAGAGAAAGCTAAAGCAGGGAGATGAATAG 2067 0.4083 MVEGEGMKSNEKKKKKKKKKNKDKAARENLKVEQSDTGLDTDMKDDIGEENIDETEFYAWNELRLHPLLMTAIYKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRILEEREKASKMADEKAEEAEKYAPTGILRALIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKAKPEIVVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNISAEDNSQHAQSCVTVSSYQRKKRQTLVFSATVALSADFRKKLKRGLIQQKQSLTNGLNSIETLSERAGMRTNAAIIDLTNPSILAAKLEESFIECREEDKDAYVYYILTVHGQGRTIVFCTSIAALRHISSILRILGINVWTLHAQMQQRARLKAMDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPKDTSKFASLCKSFSKDSFQRFPLENSYMPEVLKRLSLARQIDKITRKDSQERAEKSWFDRNANSVELVTENYDSEEEQVNKYKQMKNSSKQLKKLQTELNMLISRPLQSRTFSHRYLAGAGVTPLMQEQLQQLARQKLSDHRKKGKMVVIGQECVEALQALRSAGEEVRMDLKDLAGKQRNMANLKRKRKEEKKRLRDQRRKQKRKLKQGDE. 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11017 688 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 512 IPR001650 -
Seca3g11017 688 Pfam DEAD/DEAH box helicase 82 290 IPR011545 GO:0003676|GO:0005524
Seca3g11017 688 CDD DEADc_DDX24 69 334 - -
Seca3g11017 688 Pfam Helicase conserved C-terminal domain 356 464 IPR001650 -
Seca3g11017 688 Coils Coil 541 581 - -
Seca3g11017 688 Coils Coil 651 682 - -
Seca3g11017 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 481 IPR027417 -
Seca3g11017 688 Coils Coil 8 33 - -
Seca3g11017 688 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 90 307 IPR014001 -
Seca3g11017 688 MobiDBLite consensus disorder prediction 653 688 - -
Seca3g11017 688 SMART helicmild6 384 465 IPR001650 -
Seca3g11017 688 PANTHER RNA HELICASE 15 640 - -
Seca3g11017 688 Gene3D - 7 308 IPR027417 -
Seca3g11017 688 CDD SF2_C_DEAD 345 474 - -
Seca3g11017 688 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 58 86 IPR014014 GO:0003724
Seca3g11017 688 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 229 237 IPR000629 -
Seca3g11017 688 MobiDBLite consensus disorder prediction 25 45 - -
Seca3g11017 688 MobiDBLite consensus disorder prediction 1 45 - -
Seca3g11017 688 Coils Coil 118 138 - -
Seca3g11017 688 Gene3D - 342 586 IPR027417 -
Seca3g11017 688 SMART ultradead3 77 309 IPR014001 -
Seca3g11017 688 MobiDBLite consensus disorder prediction 658 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11017 Seca-Chr3 257223386 257232707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11017 39 490 Eukaryotic Initiation Factors Gene Family AT1G72730 26.395 5.56e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11017 K14805 - gmx:100806018 1147.5