Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11003 ATGAATATGATGCGACGGCTGAAGAGCATTGCATCTGGGAGGACTTCAGTTTCTTCAGATCCTGGAGGGGATTCTAACACCAAAAGAGCTAAGTTTGATCAAGAAACTGAAGTGAAGGTCAATGAGGAAACAAATACTTTAGACAACAAAGATCAGGAGCAGCATGTGGATGTACCAAAAGAAGTAACGGTTGGCACATCCAATGTATCTACAGTAGCTAGAACTGAGAAGTCAGGTTTCGATGAACTTCCAAAGGAATTACATGAAATGAAAATTAGAGATGAGAAAAGCAAAATCAACAATGAAAAGGATATGGAAGCAACTATATTGAGTGGTAACGGAACAGAAGCTGGTCAAATAATTACAACTGCTATTGGTGGTCGAGATGGACAACCAAAGCAGACAATCTCGTACATGGCTGAACGTGTGGTTGGGAGTGGTTCTTTTGGTGTTGTTTTTCAGGCCAAGTGCCTTGAAACTGGTGAAGCAGTTGCCATAAAGAAGGTGCTGCAAGACAAGAGATATAAGAATAGGGAACTCCAGGTTATGCGCACGGTTGATCATCCTAACATTGTTAAACTAAAGCACTGTTTCTTTTCAACCACCGAGAAAGATGAGTTGTACCTTAACCTAGTTTTGGAGTATGTACCTGAAACTGTCTACAAAGCTTCAAAGCACTATATTAGGATGCACCAACATATGCCTATGATTTATGTGCAACTTTATACATACCAGATATGCCGCGCATTAAATTATTTACATGAAGTGCTTGGCGTCTGCCATCGTGACATCAAACCCCAGAACCTATTGGTTAATCCCCAGACTCATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGTGAACCCAACATATCATACATATGCTCTCGATATTACAGAGCTCCAGAACTTATCTTTGGAGCAACTGAATACACAACTGCTATTGATATGTGGTCTGTTGGTTGTGTTTTGGCTGAGCTCCTCCTAGGACAGCCATTGTTTCCTGGAGAGAGTGGGGTTGATCAGTTAGTGGAGATCATTAAGATCTTGGGAACACCAACCAGAGAAGAAATAAGGTGCATGAATCCAAACTACAATGAATTTAAGTTTCCTCAGATTAAAGCGCACCCATGGCATAAGGTTTTTCACAAGAGAATGCCACCTGAAGCAGTGGATCTTGTGTCGAGGCTGCTTCAGTATTCACCAAATCTACGTTGCACTGCTTTGGCTGCATGTGCACACCCATTCTTCAATGATCTGCGAGACCCAAATGCACGCTTGCCAAACGGACAACCACTACCTCCCCTGTTCAATTTCACACCTCAAGAACTGGCAAATGCACCTGATGAGTTGCGACAACGTCTCATTCCTGAGCATGCAAGGAGCTGA 1404 0.4245 MNMMRRLKSIASGRTSVSSDPGGDSNTKRAKFDQETEVKVNEETNTLDNKDQEQHVDVPKEVTVGTSNVSTVARTEKSGFDELPKELHEMKIRDEKSKINNEKDMEATILSGNGTEAGQIITTAIGGRDGQPKQTISYMAERVVGSGSFGVVFQAKCLETGEAVAIKKVLQDKRYKNRELQVMRTVDHPNIVKLKHCFFSTTEKDELYLNLVLEYVPETVYKASKHYIRMHQHMPMIYVQLYTYQICRALNYLHEVLGVCHRDIKPQNLLVNPQTHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIRCMNPNYNEFKFPQIKAHPWHKVFHKRMPPEAVDLVSRLLQYSPNLRCTALAACAHPFFNDLRDPNARLPNGQPLPPLFNFTPQELANAPDELRQRLIPEHARS. 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11003 467 FunFam Shaggy-related protein kinase kappa 218 466 - -
Seca3g11003 467 SUPERFAMILY Protein kinase-like (PK-like) 137 449 IPR011009 -
Seca3g11003 467 MobiDBLite consensus disorder prediction 1 58 - -
Seca3g11003 467 Gene3D Transferase(Phosphotransferase) domain 1 218 466 - -
Seca3g11003 467 MobiDBLite consensus disorder prediction 9 25 - -
Seca3g11003 467 FunFam Glycogen synthase kinase-3 beta 122 217 - -
Seca3g11003 467 Gene3D Phosphorylase Kinase; domain 1 123 217 - -
Seca3g11003 467 ProSiteProfiles Protein kinase domain profile. 138 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11003 467 Pfam Protein kinase domain 138 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11003 467 ProSitePatterns Protein kinases ATP-binding region signature. 144 168 IPR017441 GO:0005524
Seca3g11003 467 SMART serkin_6 138 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11003 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Seca3g11003 467 CDD STKc_GSK3 133 425 IPR039192 -
Seca3g11003 467 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 102 466 - -
Seca3g11003 467 MobiDBLite consensus disorder prediction 26 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11003 Seca-Chr3 257026181 257031238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11003 144 425 Core Cell Cycle Gene Families AT3G48750 36.426 1.81e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca3g11003 Pkinase 9.2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11003 K00924 - gmx:100811346 862.062