Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11002 ATGGTATTTCCGGTGATGAACAAGATGCTGCCGACAAGCCTCCTAGAAAGAAGCGTTATCACCGACACACTCCTCAGCAGATACAAGAGCTTGAAGCGTATTTTCTTCACAACCCCTTTTTTTGTGTGTGTTTTTAAGGTTTATTTGGATTCTAAATGGTGTTTTTTTTTAATGGAGTTTAGGTTGTTCAAGGAGTGTCCTCACCCAGATGAGAAGCAAAGGCTGGAACTGAGCAAAAGGCTTTGCTTGGAAACAAGGCAGGTGAAGTTTTGGTTCCAAAATCGGAGGACCCAAATGAAGACCCAATTGGAGCGCCATGAGAACACGCTGCTTAGGCAAGAGAATGATAAGCTTAGAGCTGAGAACATGTCAATTAGGGAAGCTATGAGGAATCCCATGTGTTCCAATTGTGGTGGTCCAGCTATGATTGGTGAGATTTCACTAGAGGAACAACATCTTCGGATTGAGAATGCCCGGTTGAAGGATGAACTAGACCGAGTTTGTGCACTTGCTAACAAGTTTCTGGGTCGCCCCATTTCTTCATTGCCAAACTCAAGTTTGGAGCTTGGTGTTGGGGGCAATGGGTTTGGTGGGATGAGCACTACTGTGCCTGCAACATTACCTTTGGGGCCTGATTTTGGGGTGGGGATGTCAAATAACCCTTTAGCAATGGTGTCTCCTCCAACTAGACCAACACCTGTGGTGACTGGCTATGATAGATCAATAGAGAGGTCTATGTTTCTAGAGCTTGCTTTAGCTGCTATGGATGAGTTGGTGAAAATGGCACAGACTGGTGATCCTCTTTGGATCAGGAGTATGGAAGGGGGAAAGGAAATTTTAAACCATGAAGCATACATGAGAACATTCACTCCTTGCATTGGCTTAAGACCCAATGGTTTTGTCTCAGAAGCTTCTAGAGAGACTGGGATGGTCATCATAAACAGCTTAGCACTTGTTGAGACTCTTATGGATGCGAATCGATGGGCAGAGATGTTTCCTTCTATTATTGCCAGAACCTCCACCACTGAAGTGATATCCAATGGAATAAACGGAACCAGAAATGGTGCACTTCAACTAATGCATGCGGAAGTTCATGTTATTTCACCTCTGGTTCCGGTTCGTGAGGTGAGTTTCCTGCGGTTTTGCAAGCAGCACGCAGAAGGGGTATGGGCTGTGGTTGATGTATCCATAGATACCATAAGAGAAAATTCCGGCGCGCCTAGTTTTGTGAACTGTAGGAGGCTTCCTTCTGGTTGTGTGGTGCAAGATATGCCTAATGGTTACTCCAAGGTGACATGGGTGGAGCATGCAGAATACGACGAAAGCCCAGTCCATCAGCTGTACAGGCCCTTGTTGAGTTCAGGTATGGGGTTCGGTGCCCAACGCTGGGTCACTACCCTACAACGCCAATGCGAGTGCCTTGCCATATTAATGTCCTCCGCAACACCCTCTCGAGACCACTCCGCAATAACTGCAAGTGGAAGGAGGAGCATGTTGAAGCTGGCACAACGCATGACGAACAACTTCTGTGCGGGTGTGTGCGCTTCTACGGTGCACAAATGGAACAAGTTGAATGCGGGGAACGTGGATGAAGACGTTAGGGTTATGACACGTAAGAGCGTGGATGATCCCGGTGAGCCACCGGGCATCGTGCTCAGCGCAGCCACATCCGTGTGGCTCCCTGTTTCGCCACAGAGACTCTTCGATTTCCTTCGTGACGAGAGGCTCCGAAGCGAGTGGGACATACTCTCTAATGGTGGTCCCATGCAAGAGATGGCCCACATCGCCAAGGGTCAAGACCATGGCAACTGCGTCTCTCTCTTAAGAGCCAGCGCTATGAATTCGAATCAGAGTAGCATGCTGATATTGCAGGAGACGTGCATAGACGCTGCCGGGTCGCTTGTGGTGTACGCGCCCGTGGATATTCCGGCCATGCACGTTGTCATGAACGGTGGTGATTCGGCTTACGTGGCGTTGCTGCCATCGGGGTTTGCCATTGTCCCTGATGGGCCTGGGTCGCGTGGGCTTGAGAATGGGCCCACTGCCAACGGAGGTGATAACGGTAATGGGGCACGTGTGAGTGGGTCCCTTCTAACGGTGGCGTTTCAGATCCTCGTGAATAGCCTCCCTACGGCGAAGCTCACGGTGGAGTCAGTAGAAACGGTGAATAACCTAATCTCTTGCACGGTTCAGAAAATCAAAGCCGCGCTTCATTGTGAAAGCTAA 2226 0.4928 MVFPVMNKMLPTSLLERSVITDTLLSRYKSLKRIFFTTPFFVCVFKVYLDSKWCFFLMEFRLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIREAMRNPMCSNCGGPAMIGEISLEEQHLRIENARLKDELDRVCALANKFLGRPISSLPNSSLELGVGGNGFGGMSTTVPATLPLGPDFGVGMSNNPLAMVSPPTRPTPVVTGYDRSIERSMFLELALAAMDELVKMAQTGDPLWIRSMEGGKEILNHEAYMRTFTPCIGLRPNGFVSEASRETGMVIINSLALVETLMDANRWAEMFPSIIARTSTTEVISNGINGTRNGALQLMHAEVHVISPLVPVREVSFLRFCKQHAEGVWAVVDVSIDTIRENSGAPSFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESPVHQLYRPLLSSGMGFGAQRWVTTLQRQCECLAILMSSATPSRDHSAITASGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNSNQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGLENGPTANGGDNGNGARVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES. 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11002 741 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 62 738 IPR042160 -
Seca3g11002 741 FunFam Homeobox-leucine zipper protein GLABRA 2 249 472 - -
Seca3g11002 741 SUPERFAMILY Homeodomain-like 61 106 IPR009057 -
Seca3g11002 741 ProSiteProfiles 'Homeobox' domain profile. 63 102 IPR001356 GO:0003677
Seca3g11002 741 Coils Coil 96 131 - -
Seca3g11002 741 SUPERFAMILY Bet v1-like 501 734 - -
Seca3g11002 741 SUPERFAMILY Bet v1-like 242 473 - -
Seca3g11002 741 SMART START_1 249 473 IPR002913 GO:0008289
Seca3g11002 741 SMART HOX_1 49 106 IPR001356 GO:0003677
Seca3g11002 741 ProSitePatterns 'Homeobox' domain signature. 77 100 IPR017970 GO:0000981|GO:0006355
Seca3g11002 741 Gene3D - 49 118 - -
Seca3g11002 741 ProSiteProfiles START domain profile. 240 476 IPR002913 GO:0008289
Seca3g11002 741 Pfam Homeodomain 61 100 IPR001356 GO:0003677
Seca3g11002 741 CDD homeodomain 61 102 IPR001356 GO:0003677
Seca3g11002 741 Pfam START domain 249 473 IPR002913 GO:0008289
Seca3g11002 741 Gene3D - 314 470 IPR023393 -
Seca3g11002 741 CDD START_ArGLABRA2_like 244 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11002 Seca-Chr3 256995281 257000699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11002 62 741 Homeobox Transcription Factor Family AT3G61150 69.956 0.0 967
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca3g11002 START 1.9e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11002 K09338 - gmx:100811873 1204.5