Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10982 ATGACTTTTGCTCAGTGTTCAATTTCCGACATGTTTCAACATAGAAACCATGATGATTTCGCAACTGTGGCAGGGTTTGCTTTTGTCTACATGGAAGACGAACGTGATGCTGAGTATGCAATCAGAAGACTTGATAGAACAGAATTTGGTCGAAAGGGGCGCAGGATTCGTGTTGAGTGGACAAAGCAAGAACGTGACAGTAGAAGATCTGGTGATTCAAGAAAATCTTCATCTAGTTCAAGACCATCCAAGACTTTGTTTGTTATAAATTTTGATCCTGTTCACACAAGGACAAGGGATCTGGAGAGACACTTTGATCCCTATGGGAAAATATTGAATATAAGGATCAGAAGGAATTTTGCTTTTATTCAGTATGAATCCCAGGAGGATGCCACTAGAGCTTTGGATGCAACTAACCTAAGGTTGTATTTACCTTCTCAATTGTTGACTAGCAAGTTTATGGATCGTGTTATCACAGTGGAGTATGCTATAAGAGATGATGATGACAGAAGGAATGGATATAGTCCTGATAGAAGAGGTCATGACTCCCCTGATGGGAGATATGGTCGTGGCAGATCCCCAAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCAAATCCAGCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACGAGCTGAAAGCCCAATAAATGGGAGATATGATAGCCGGTCTCCTCCACCCCGAGATAGGTCCCGATCCTGA 747 0.4311 MTFAQCSISDMFQHRNHDDFATVAGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGDSRKSSSSSRPSKTLFVINFDPVHTRTRDLERHFDPYGKILNIRIRRNFAFIQYESQEDATRALDATNLRLYLPSQLLTSKFMDRVITVEYAIRDDDDRRNGYSPDRRGHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPASRPEPRGSPKYERAESPINGRYDSRSPPPRDRSRS. 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10982 248 MobiDBLite consensus disorder prediction 168 188 - -
Seca3g10982 248 MobiDBLite consensus disorder prediction 219 248 - -
Seca3g10982 248 SMART rrm1_1 85 152 IPR000504 GO:0003723
Seca3g10982 248 MobiDBLite consensus disorder prediction 61 75 - -
Seca3g10982 248 SUPERFAMILY RNA-binding domain, RBD 23 148 IPR035979 GO:0003676
Seca3g10982 248 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 18 100 - -
Seca3g10982 248 Gene3D - 67 214 IPR012677 -
Seca3g10982 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 165 IPR000504 GO:0003723
Seca3g10982 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 139 IPR000504 GO:0003723
Seca3g10982 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 52 IPR000504 GO:0003723
Seca3g10982 248 MobiDBLite consensus disorder prediction 168 248 - -
Seca3g10982 248 MobiDBLite consensus disorder prediction 61 81 - -
Seca3g10982 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 63 IPR000504 GO:0003723
Seca3g10982 248 Gene3D - 3 66 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10982 Seca-Chr3 256665980 256669524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10982 26 156 Eukaryotic Initiation Factors Gene Family AT3G16380 24.088 1.83e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10982 K12893 - gmx:100797778 342.043