Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10981 ATGGCAGGAGCTGAAGCTACCAAAAATGCTTCTCCTACAACCACTGCCACAAACATGGCCAAATCAAACAAGCCCACCATCAAGAGATTCATTGGGGTGAGGCAAAGGCCTTCAGGAAGATGGGTAGCTGAGATCAAAGACTCATCTCAACATGTGAGGTTATGGCTTGGAACCTATGACACACCAGAAGAAGCAGCTAGAGCATATGATGAAGCAGCTAGAGCTTTGCGTGGTGAAAAGGCCAGAACCAATTTTGCATCAGTGAACAAAGCCACAGACCAATCAGGCTCTGCCCCTTGTAGTGAAGGGCTATCACAAACTGGTTCTGAAGGTAGAAATGGTTTAAGCTTTGCTTCCTTGAAAGCCAAGCTGAGCAAGAATCTTCAGAGCATTATGGCCAGAGCAAGTGATAACAAGTCCTCATCAAAAAGCAGGGTGAGTGACCACTTCACCTTTGCTAGCATATTCCACTGTAGTAGGAGTAATTACCAGTACCAAATCCCTGCAGTGGATATGAAAAGCATTGAGAAAGTGGTGCAGCCTAGTATCATTGTTCCCCCTGTAGATGGTGATCATTACCCTGCTGCTCCAAGTTGGGAAGCTTCTAGTGTCTCTGACTGTAGCTCTGAATGGGTTGGGTTCCAGCAGCAACATGGGTTGGACTCTGATGGGTCTGATATAGGAGAGGTTAGTGTTGGTGATCAAGGGTTCTTGGAACAACTCATGGGGTGGGTTGATAGCCCTGATGTTTATGCAAGTGAGGGTTCAAGGAGTAAGAGGTTCAAGGTCTCTTCTTCTGTGCTTGTGCCCCCGACTTTCTCTGGCTCTTCTTATGACTGTGGCTCCCCTTATAGTGGTTATGCCTCTCCATATAACGGTTGTGGCTCCCCATATAATAGTTATGCCTCTCCCTACTATGGTAGGAAGTAA 930 0.4667 MAGAEATKNASPTTTATNMAKSNKPTIKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGEKARTNFASVNKATDQSGSAPCSEGLSQTGSEGRNGLSFASLKAKLSKNLQSIMARASDNKSSSKSRVSDHFTFASIFHCSRSNYQYQIPAVDMKSIEKVVQPSIIVPPVDGDHYPAAPSWEASSVSDCSSEWVGFQQQHGLDSDGSDIGEVSVGDQGFLEQLMGWVDSPDVYASEGSRSKRFKVSSSVLVPPTFSGSSYDCGSPYSGYASPYNGCGSPYNSYASPYYGRK. 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10981 309 CDD AP2 28 86 IPR001471 GO:0003700|GO:0006355
Seca3g10981 309 MobiDBLite consensus disorder prediction 1 26 - -
Seca3g10981 309 MobiDBLite consensus disorder prediction 7 24 - -
Seca3g10981 309 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Seca3g10981 309 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Seca3g10981 309 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
Seca3g10981 309 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Seca3g10981 309 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Seca3g10981 309 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Seca3g10981 309 FunFam ethylene-responsive transcription factor RAP2-11 28 87 - -
Seca3g10981 309 Pfam AP2 domain 29 78 IPR001471 GO:0003700|GO:0006355
Seca3g10981 309 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 146 - -
Seca3g10981 309 MobiDBLite consensus disorder prediction 89 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10981 Seca-Chr3 256662820 256663749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10981 11 87 AP2-EREBP Transcription Factor Family AT5G19790 59.740 2.03e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca3g10981 AP2 9.2e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10981 K09286 - gmx:100799444 399.053