Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10969 ATGGCTGCGGAAGCTTCTCGAAACGTTGATCTCACGCTGGGAGAACCCAAGGGACCCAAAGAGGAGCCCCAAACGGAAGAAGGGTCACCATCAGCTGCAGCAATACGCGTGATGCCGGTGGCGGTGCACATGCCCGCCGGGATGTCCATGTCTATGCAAGTGAACAAGGCCCAAGCCCAGGCCCAGGCCCAACAGCCACCGCAAAAGAGGGCCTCCACCAAGGATCGTCACACCAAGGTGGAGGGCCGAGGCCGGAGGATCCGAATGCCTGCCACGTGTGCGGCTAGGATCTTTCAGCTGACCCGGGAACTCGGGCACAAGTCCGACGGCGAGACCATCCGGTGGCTCCTCGAACACGCCGAGCCCGCAATCATCGCCGCGACGGGAACCGGCACCGTTCCCGCCATCGCGATGTCCGTGAACGGCACCCTGAAGATCCCAACCACCTCCCCTTCCAACAACAATAATAAAAATTCCGACCCGGAGCCCGGAGACCCACCCGAGAAGAAGAAACGTAAACGACCCGCGAGCAGTGCATACGTTGACATAAACGACGGCGCCGTTTCAGTAACGGCCGGGCTAACAACCTCGAATAACCCGAGCAACCCAACCACTACAATTCCGCAACAAACCGCGATTCCGTTACCGCAAAACGTGGTCCCCATGTGGGCCATACCCTCAAACGCCATCGTTCCAGCCGCAGGCGCGTTCTTTGTGGTCCCTCCCATGGCAACAGCACCTTCAAACCAGCCTCAATTCTTCACCATAGCTCGACCAATCTCCGCTTTCGTCTCCTCCATGGTCACTCCGGTTCAACTCCAACCAACCTCATCTTCATGTTCCACCGCTCCATCATCAAAATCGCCGGCGAGAGCCACCGTCATGGCGCCTACCACCACCACCGCAACCTCCACCACCACTACGCAGACGCTGAGGGATTTCTCCTTGGAAATTTACGACAAGCAAGAGCTCCAATTTATGTCGCGCTCTTCTTCGAAGCATTGA 1005 0.5811 MAAEASRNVDLTLGEPKGPKEEPQTEEGSPSAAAIRVMPVAVHMPAGMSMSMQVNKAQAQAQAQQPPQKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMSVNGTLKIPTTSPSNNNNKNSDPEPGDPPEKKKRKRPASSAYVDINDGAVSVTAGLTTSNNPSNPTTTIPQQTAIPLPQNVVPMWAIPSNAIVPAAGAFFVVPPMATAPSNQPQFFTIARPISAFVSSMVTPVQLQPTSSSCSTAPSSKSPARATVMAPTTTTATSTTTTQTLRDFSLEIYDKQELQFMSRSSSKH. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10969 334 ProSiteProfiles TCP domain profile. 73 127 IPR017887 -
Seca3g10969 334 MobiDBLite consensus disorder prediction 1 33 - -
Seca3g10969 334 MobiDBLite consensus disorder prediction 162 178 - -
Seca3g10969 334 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 320 IPR005333 GO:0003700
Seca3g10969 334 MobiDBLite consensus disorder prediction 52 69 - -
Seca3g10969 334 MobiDBLite consensus disorder prediction 144 182 - -
Seca3g10969 334 Pfam TCP family transcription factor 72 165 IPR017887 -
Seca3g10969 334 MobiDBLite consensus disorder prediction 52 83 - -
Seca3g10969 334 MobiDBLite consensus disorder prediction 276 305 - -
Seca3g10969 334 MobiDBLite consensus disorder prediction 144 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10969 Seca-Chr3 256571035 256572039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10969 66 333 TCP Transcription Factor Family AT2G45680 56.536 9.41e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca3g10969 TCP 3.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10969 - - gmx:100804760 417.542