Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10961 ATGGGCGGTATCGGCAAGACAACCATTGCAAGTGAAGTATATAACAAACTTCAGTCTGAATATAATAGTTGTTGTTTTTTGGAAAATGTAAGAGAAGAATCATCAAAACATGGAATTAAATCTTTGAAAGATAAGCTCTTTTCTAAATTATTAGGAGAAGATGCGAAAGTCGACACACCAAATGGGTTGTCCAAAGACATTGAGAGAAGGATTGATGGTATGAAGGTTTTTATTGTTCTTGATGATGTGAGTGATTCAGACCATCTAGAAAACTTATTAGGTGAAGCTCGTGATATGCTTGGACCAGACAGTAGAATAATTATAACAACTAGAGATAAACAAGTGCTTACTGCTTGCAAAGCTGATGCTATACACAAGGTTGGAGAGTTGAGTTCCAATGAAGCACTTGAGCTTTTCAATTTGAATGCCTTTAACCAAAGTCATTTGGAAAATGAGTATAGTGAGCTATGGAAGAGGGTGGTTGATTATGCCAGTGGCATTCCATTGGTTCTTAAAGTTTTGGGACGTCTTCTTCATGGAAAAGACAAGGAAGTATGGGAAAGTCAGTTAAACAAGCTTGAAAAAATGCCAAACAAAAAAGTTTACCACGTAATGAGATTGGGTTATGATGATCTAGATCGCAAAGAGAAAAAGATTTTTTTAGATCTTGCATGTTTCTTCATTGGATTGGATTTGACAGTGGGTGACATAAAAAGTTTATTGAGAGATGGTGAAAGTGATAATTCATTGACTGATGTGTTTGAAAGGCTGAAAGATAAAGCTCTTGTAACCTTTTTTGAGGATAATAAGAGAAATGGTGTATCTATGCATGATACCATACGCGAAATGGCTTGGGAGATTGTTCGTGAAGAATCTAGTGAAGACCCTGGAAGCCGTAGTCGGTTATGGGATCGTGATGACTGTAGGGAAGTGCTAGAAAATGACAAGCATCGATTCCCTTATGATGATGAGTTGGTATTTGAAATCACAATAAGTGATGGTGCAGGTGAAGGTAATGAAGACAAGGGCAGTGCCACAATGCGCATACATGGCCCTTATGTAATTAATTCAGATCATGTGTGTTTGATGTACAATGGGTTCTGTATCCAATCATTTCTCATTCCACTCTCCCTGCACCTTCTGTAG 1146 0.3761 MGGIGKTTIASEVYNKLQSEYNSCCFLENVREESSKHGIKSLKDKLFSKLLGEDAKVDTPNGLSKDIERRIDGMKVFIVLDDVSDSDHLENLLGEARDMLGPDSRIIITTRDKQVLTACKADAIHKVGELSSNEALELFNLNAFNQSHLENEYSELWKRVVDYASGIPLVLKVLGRLLHGKDKEVWESQLNKLEKMPNKKVYHVMRLGYDDLDRKEKKIFLDLACFFIGLDLTVGDIKSLLRDGESDNSLTDVFERLKDKALVTFFEDNKRNGVSMHDTIREMAWEIVREESSEDPGSRSRLWDRDDCREVLENDKHRFPYDDELVFEITISDGAGEGNEDKGSATMRIHGPYVINSDHVCLMYNGFCIQSFLIPLSLHLL. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10961 381 PRINTS Disease resistance protein signature 70 84 - -
Seca3g10961 381 PRINTS Disease resistance protein signature 164 178 - -
Seca3g10961 381 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 313 IPR044974 GO:0006952
Seca3g10961 381 Pfam NB-ARC domain 1 199 IPR002182 GO:0043531
Seca3g10961 381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 223 IPR027417 -
Seca3g10961 381 Gene3D - 1 125 IPR027417 -
Seca3g10961 381 SUPERFAMILY "Winged helix" DNA-binding domain 199 313 IPR036390 -
Seca3g10961 381 Gene3D - 129 213 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10961 Seca-Chr3 256445713 256447045 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10961 1 328 WRKY Transcription Factor Family AT5G45050 33.939 8.28e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10961 - - ccaj:109792249 385.571