Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10954 ATGGTGAGAGGAAAGACACAGATGAAGCGTATAGAGAACGCCACAAGCAGGCAAGTCACTTTCTCAAAACGGCGGAATGGGTTACTGAAGAAGGCCTTTGAGCTATCAGTTCTGTGTGATGCTGAGGTGGCACTTATCATCTTCTCTCCAAGAGGCAAGCTTTATGAATTTTCAAGCTCCAGGTTTGGATCTTTCTCTCTTCTTTTTTTTCTTCTTCTCATATTGTGCGATTCATTGCATCTGCATCATGCTGATTTTAGCATTCCCCTAATTCATTCATTAATGGTTCCTTTAATTTAA 300 0.4067 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSRFGSFSLLFFLLLILCDSLHLHHADFSIPLIHSLMVPLI. 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10954 99 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca3g10954 99 Gene3D - 13 67 IPR036879 GO:0003677|GO:0046983
Seca3g10954 99 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
Seca3g10954 99 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca3g10954 99 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca3g10954 99 CDD MADS_MEF2_like 3 56 IPR033896 GO:0000977|GO:0045944
Seca3g10954 99 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca3g10954 99 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca3g10954 99 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca3g10954 99 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca3g10954 99 SUPERFAMILY SRF-like 3 63 IPR036879 GO:0003677|GO:0046983
Seca3g10954 99 FunFam Agamous-like MADS-box protein AGL13 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10954 Seca-Chr3 256372630 256372929 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10954 1 60 MADS-box Gene Family AT2G45660 95.000 2.72e-37 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca3g10954 SRF-TF 1.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10954 - - rcu:8272497 110.923