Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10918 ATGGAAGCTAAGCCTCTTCGAATTGTTCCCTCTTCACACAACACCTCTGAGGGGTTAGGAGGTGGACCCCAGAAGAAGATTGACATGGGACACATGATGGAGGGTGGTGTTAGTGTAGTAGTTGATGAAGGGAAGAGGGTTGTTCTGGTGAAGGAAGAGAACTCTTCTTCCTCCTCCACTGTTGAACTTGATCTTGGGGTTGCTGCACCACACCCTGTGATCACAGCACGCCACCAAAAGTGCTGTCTGTTCACAGAGCCTCAGAGGCGTGAGCTTGACCATCAAGTTTTCATCTTCAACCACTTTGCTTATAACCTTCCCCTTCCTCCCCACATTGCGCAATTTCCAAGCAATATGTCAGAATACAGTCACCTGGGTTTTGATTATGGGAGTATGGTGGATCCAGAACCTTATAGGTGTAGAAGAACTGATGGAAAGAAATGGAGGTGCAGTAAGAAGGTAGTGCCTAATCAGAAGTACTGTGAAAGACACATGCATAGAGGTCGTAATCGTTCAAGAAAGCCTGTGGAAACATCTCAAGTTAACTCTCCTTTGACAACAAAGCCTTGTGGCAACTTACATACCAAACTAGCCCCAAATACAGAATCTGCAGTTTCAAATCCAAACCTTTTGGCCATTCAACCCAGTCACAGATCTTCCTGCACCCCATCAAGGAGCCTTTGTGTTGTCAATGCCCCTTCTGCTAATAATAGGTCAAGAAATATCATAGGTTCTGCTGATTACCACACCTCCTTTTCTTCTGCCACTGTGGTGACACATGCCTACACTCTTGCCACTGCAGTTGCACCTAAGGTGACTTTCAGCAGCATGGAATCTGTTACTTCAGATAAAAGGAGTCACCTAAATGTGTGCAAGAAAGATGACCAGATCAAGAGCTGTACCAGCAGCAAGTTCAGTACTAAAGATGGTGGAAAAGGAAGAGTTGTCTGTGATAGTAATGGTATCTCTGCTGGAATAGGCTTCTCTCCAAGGAGTGTTCTTCAAGTTTCTGGTAGCAATCATTCATACCTCAATGACAGAAACAATATAGAACTTGAACCTGGTAGGTGCCGGAGAACAGATGGTAAGAAGTGGCGATGCAAGAGTGCTGTTCTTCCTGGTCAGAAGTATTGTGCCACACATATGCACAGGGGTGCTAAAAAGCGTTTTACAAATCATGAACCAGCTACTACTACTCCTAGTTCTGCTGTTACCATTGCTAGGTTGTCTTACCCTTCAGCCACAACAACCAACATTCAGAAAACGTATTGTACAATTCCAAATACAAATCTTTCCATCTCAGTCCCAGCAAGTGAACCCTCCATACAATGTTGTGACAAAAGTCCTAGCAGCAGTGACACTGATACCACCATCACTGACACCATCAATGAGTGTAGCTATGTTTCTTTCTAA 1413 0.4452 MEAKPLRIVPSSHNTSEGLGGGPQKKIDMGHMMEGGVSVVVDEGKRVVLVKEENSSSSSTVELDLGVAAPHPVITARHQKCCLFTEPQRRELDHQVFIFNHFAYNLPLPPHIAQFPSNMSEYSHLGFDYGSMVDPEPYRCRRTDGKKWRCSKKVVPNQKYCERHMHRGRNRSRKPVETSQVNSPLTTKPCGNLHTKLAPNTESAVSNPNLLAIQPSHRSSCTPSRSLCVVNAPSANNRSRNIIGSADYHTSFSSATVVTHAYTLATAVAPKVTFSSMESVTSDKRSHLNVCKKDDQIKSCTSSKFSTKDGGKGRVVCDSNGISAGIGFSPRSVLQVSGSNHSYLNDRNNIELEPGRCRRTDGKKWRCKSAVLPGQKYCATHMHRGAKKRFTNHEPATTTPSSAVTIARLSYPSATTTNIQKTYCTIPNTNLSISVPASEPSIQCCDKSPSSSDTDTTITDTINECSYVSF. 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10918 470 MobiDBLite consensus disorder prediction 168 189 - -
Seca3g10918 470 ProSiteProfiles QLQ domain profile. 83 118 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca3g10918 470 PANTHER GROWTH-REGULATING FACTOR 5 337 430 IPR031137 GO:0005634|GO:0006351|GO:0032502
Seca3g10918 470 MobiDBLite consensus disorder prediction 175 189 - -
Seca3g10918 470 ProSiteProfiles WRC domain profile. 134 178 IPR014977 -
Seca3g10918 470 ProSiteProfiles WRC domain profile. 351 395 IPR014977 -
Seca3g10918 470 Pfam WRC 135 177 IPR014977 -
Seca3g10918 470 Pfam WRC 353 391 IPR014977 -
Seca3g10918 470 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10918 Seca-Chr3 255818368 255822355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10918 88 412 GRF Transcription Factor Family AT2G45480 31.608 4.96e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10918 - - gmx:100795050 614.379