Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10915 ATGTCGGTGACTCTGCATACAAACCTAGGCGACATCAAGTGCGAAATCTTCTGCGACGAGGTTCCCAAAACCTCTGAGAACTTTTTAGCGCTATGTGCAAGTGGTTACTATGATGGGACTATATTTCACCGCAACATTAAAGGTTTTATGATTCAAGGTGGAGACCCAACTGGTACTGGCAAAGGGGGAACTAGTATATGGGGCAAGAAATTCAATGATGAGATTAGAGAATCTTTGAAGGTGAGTTCATCCACCATGCTAATTACTATGAAGCCGTGTCTGTTCCAGCACAATGCAAGGGGAATATTGTCAATGGCTAATAGTGGTCCAAATACTAATGGAAGTCAGTTCTTCATATCTTATGCAAAGCAGCCTCATTTGAATGGACTATATACTGTGTTTGGCAGAGTAATTCATGGATTTGAAGTTCTTGATCTCATGGAAAAGACTCAAACAGGGGCAGGGGATCGACCACTTGCTGAGATAAGGCTTAATCGTGTAACAATACATGCTAATCCACTTGCTGGTTAG 531 0.42 MSVTLHTNLGDIKCEIFCDEVPKTSENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKVSSSTMLITMKPCLFQHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKTQTGAGDRPLAEIRLNRVTIHANPLAG. 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10915 176 PIRSF Peptidylpro_ismrse 1 93 IPR024936 GO:0003755
Seca3g10915 176 PIRSF Peptidylpro_ismrse 89 173 IPR024936 GO:0003755
Seca3g10915 176 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 129 144 IPR002130 GO:0000413|GO:0003755
Seca3g10915 176 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 101 116 IPR002130 GO:0000413|GO:0003755
Seca3g10915 176 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Seca3g10915 176 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 116 128 IPR002130 GO:0000413|GO:0003755
Seca3g10915 176 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Seca3g10915 176 Gene3D - 1 176 IPR029000 -
Seca3g10915 176 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 169 IPR044666 -
Seca3g10915 176 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 6 169 IPR002130 GO:0000413|GO:0003755
Seca3g10915 176 SUPERFAMILY Cyclophilin-like 1 173 IPR029000 -
Seca3g10915 176 CDD Cyclophilin_PPIL3_like 1 169 - -
Seca3g10915 176 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 37 54 IPR020892 GO:0003755|GO:0006457
Seca3g10915 176 FunFam Peptidyl-prolyl cis-trans isomerase 1 176 - -
Seca3g10915 176 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 168 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10915 Seca-Chr3 255793255 255797498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10915 3 173 U-box Gene Family AT5G67530 48.538 1.86e-51 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10915 K12734 - gmx:100306466 313.538