Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10906 ATGGCTTCGACCGTTCACCGACATCAGAGGGGAACCGTCAAGTTGGATCGCCCCAACCACCTCAGAACGGCGTCTCTCAAGCCCCGCCTCCCTCCCTCGCCGGGATCCGCCCTCCGCCGAAGTAGCCCCGCCTCTCTCGCCGCCAGAAACGGAGACGGAGTGCCTGGAAGAGTTCGAGTGGCTGTAAGATTGAGACCACGAAATAATGAAGAAATGATGGCAGATGCTGATTTTGCTGACTGTGTTGAATTACAACCAGAGCTTAAAAGACTGAAACTTCGGAGAAACAATTGGGATTCAGACACCTATGAATTTGATGAAGTGCTTACTGAATTTGCCTCACAGAAGCGTGTTTATGAAGTTGTAGCTAAGCCAGTTGTTGAGAGTGTTCTTGATGGTTATAATGGAACTGTGATGGCTTATGGTCAAACTGGAACGGGGAAAACATTTACTCTTGGACGATTGGGGGAAGAAGACACCTCTGATCGTGGAATCATGGTCCGTTCCATGGAGGATATTTTAGCTGACTTATGTCCAGAAACTGATTCTGTCACTGTCTCATATCTGCAGCTTTACATGGAGACTCTCCATGACTTGCTTAATCCAGCAAATGATAATATTCCCATAGTGGAGGATCCCAGAACTGGTGATGTTTCTTTGCCTGGGGCAACTCTTGTCGAAATCAGGAATCAGCAAAGTTTCTTGGAATTGCTAAAAGTAGGAGAATCTAATCGAGTTGCTGCTAACACGAAGTTGAACACTGAATCTTCTCGTAGTCATGCTATACTGACGGTAAATGTTAAGAGGTCTGTCATGGAAAATGAAGATACTGTTTCTACTGAAAATGATGATGCCTCTCACTTGACTAGACCTTCAAAACCACTTATTCGAAAGAGCAAACTGGTTGTGGTAGATTTGGCAGGATCAGAGCGTATCCATAAGTCAGGAAGTGAAGGGCACATGCTAGAGGAAGCTAAATATATCAATCTTTCTCTCAGTGCACTTGGAAAATGTATTAATGCTCTAGCAGAGAGCAATGCTCATGTTCCATTTCGTGATTCAAAGCTCACTAGGTTGCTCAGAGATTCCTTTGGAGGAACAGCACGGACATCATTGATTGTGACTATTGGCCCATCTCCACGTCATCGAGGAGAGACTTCTAGTACCATATTGTTTGGTCAAAGGGCTATGAAAGTTGAAAATATGTTGAAAATAAAAGAGGAGTTTGATTATAAAAGTTTGTCTCGGAGGCTTGAGGTGCAATTAGATAAGCTTATTGCAGAAAATGAAAGGCAGCAGAAGGCTTTTGAGGATGAAGCTGAAAGAATAAATTTGGAGGCGCAATATCGTATTGCTGAGGTTGAGAGGAAATTTGCAGATGCACTAGAGAAAGAGAGATTGAAATGCCAGATGGAGTACATGGAATCAGTTAAGCAGCTGGAGCAGAAGTTGGTGTCAAGTCAAGAAAAACACGCTTGCAATTGTTTTGTGGATGGTTGTGGAGAGTTGTGCCCACACCAATTTTTTTGCAATTTGGCTCTCTGGCGAATTTGCAATTCCTCCTGCCCTGCATTCTGGTGA 1581 0.4402 MASTVHRHQRGTVKLDRPNHLRTASLKPRLPPSPGSALRRSSPASLAARNGDGVPGRVRVAVRLRPRNNEEMMADADFADCVELQPELKRLKLRRNNWDSDTYEFDEVLTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGEEDTSDRGIMVRSMEDILADLCPETDSVTVSYLQLYMETLHDLLNPANDNIPIVEDPRTGDVSLPGATLVEIRNQQSFLELLKVGESNRVAANTKLNTESSRSHAILTVNVKRSVMENEDTVSTENDDASHLTRPSKPLIRKSKLVVVDLAGSERIHKSGSEGHMLEEAKYINLSLSALGKCINALAESNAHVPFRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETSSTILFGQRAMKVENMLKIKEEFDYKSLSRRLEVQLDKLIAENERQQKAFEDEAERINLEAQYRIAEVERKFADALEKERLKCQMEYMESVKQLEQKLVSSQEKHACNCFVDGCGELCPHQFFCNLALWRICNSSCPAFW. 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10906 526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 434 IPR027417 -
Seca3g10906 526 MobiDBLite consensus disorder prediction 9 23 - -
Seca3g10906 526 MobiDBLite consensus disorder prediction 1 52 - -
Seca3g10906 526 ProSitePatterns Kinesin motor domain signature. 299 310 IPR019821 GO:0003777|GO:0005524|GO:0007018
Seca3g10906 526 Coils Coil 470 490 - -
Seca3g10906 526 CDD KISc 57 397 - -
Seca3g10906 526 Gene3D Kinesin motor domain 52 430 IPR036961 -
Seca3g10906 526 PRINTS Kinesin heavy chain signature 349 370 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca3g10906 526 PRINTS Kinesin heavy chain signature 300 318 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca3g10906 526 PRINTS Kinesin heavy chain signature 133 154 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca3g10906 526 ProSiteProfiles Kinesin motor domain profile. 57 399 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca3g10906 526 PANTHER CENTROMERE PROTEIN E 57 488 IPR027640 GO:0003777|GO:0007018
Seca3g10906 526 Pfam Kinesin motor domain 63 399 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca3g10906 526 FunFam Kinesin-like protein 49 429 - -
Seca3g10906 526 Coils Coil 415 446 - -
Seca3g10906 526 SMART kinesin_4 55 407 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10906 Seca-Chr3 255705335 255711743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10906 52 446 Calmodulin-binding Proteins AT5G65930 32.524 2.46e-47 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10906 - K10396 gmx:100793472 823.928