Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10904 ATGGATCCTGTAGCAGCACAAGGGCGTCCTCTCCCTCCTCCTTTCCTCACTAGAGACCTTCACCTACATCCTCACCACCAATTCCAACCCCACCACAACAACCACAATGAAGACGACAATGGTACCTTGAACCGTGGCCAGAAGCGAGATCGTGATAACGACAACAACGGTTCCACCACTCCCACCGGCGAGGGAAAAGAAACTTCTTTTGAGGGTGGAAGTGGTGAGATGGGGAGAAGACCCAGAGGAAGACCAGCCGGTTCAAAGAACAAACCAAAACCACCCATCATCATCACAAGAGACAGCGCCAACGCTCTCCGATCTCATGTCATGGAAGTCGCTAACGGTTGCGACATCATGGAGAGCGTAACCGTCTTTGCACGGCGGCGACAACGCGGGGTTTGTATCCTCAGCGGTAGCGGCACCGTCACTAATGTCACTCTCCGACAACCGGCTTCTCCGGGTGCAGTCGTCACCCTCCATGGAAGGTTCGAGATTCTCTCCCTTTCTGGGTCCTTTCTGCCTCCGCCGGCTCCACCTGCTGCCTCCGGCCTGGCTATTTACCTGGCAGGAGGACAAGGGCAGGTTGTCGGCGGAAGCGTGGTAGGACCCTTATTGGCCTCAGGGCCGGTCGTTATCATGGCAGCTTCCTTCGGGAATGCTGCCTATGAGAGACTACCCTTGGAGGATGAGGAAACCCCGGTGACCGTTCCAGGGAGCGGAGGGTTAGGGTCACCGGGGATCGTGGGAACGCAACCACAATCACAACCACAACAACAGCAACAACAACTTGTGCCAGATCCTAACAGCTCACTTTTCCATGGAGTGTCTCAAAATCTTCTCAATCCATGCCAATTACCAGCTGAGGGTTATTGGGGTGGCAGTGCTCGCCCTCCTTTTTAA 903 0.5504 MDPVAAQGRPLPPPFLTRDLHLHPHHQFQPHHNNHNEDDNGTLNRGQKRDRDNDNNGSTTPTGEGKETSFEGGSGEMGRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEVANGCDIMESVTVFARRRQRGVCILSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLEDEETPVTVPGSGGLGSPGIVGTQPQSQPQQQQQQLVPDPNSSLFHGVSQNLLNPCQLPAEGYWGGSARPPF. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10904 300 MobiDBLite consensus disorder prediction 19 55 - -
Seca3g10904 300 FunFam AT-hook motif nuclear-localized protein 106 233 - -
Seca3g10904 300 CDD DUF296 107 174 IPR005175 -
Seca3g10904 300 Gene3D - 106 236 - -
Seca3g10904 300 MobiDBLite consensus disorder prediction 247 276 - -
Seca3g10904 300 MobiDBLite consensus disorder prediction 231 276 - -
Seca3g10904 300 MobiDBLite consensus disorder prediction 1 97 - -
Seca3g10904 300 SUPERFAMILY AF0104/ALDC/Ptd012-like 103 238 - -
Seca3g10904 300 Pfam Plants and Prokaryotes Conserved (PCC) domain 107 219 IPR005175 -
Seca3g10904 300 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 266 IPR014476 GO:0003680
Seca3g10904 300 ProSiteProfiles PPC domain profile profile. 103 241 IPR005175 -
Seca3g10904 300 PIRSF ESCAROLA 16 300 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10904 Seca-Chr3 255687441 255688343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10904 1 300 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 62.733 1.02e-88 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10904 - - gmx:100816243 422.55