Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10901 ATGAGCGTAAACTCTAGTTGTAGTGGAAGTGGTGGTGGTGGTAGTGGTCCTTGTGGCGCGTGCAAGTTCTTGAGGAGAAAGTGCGTGGCGGGGTGTATCTTTGCGCCATATTTCGATTCAGAGCAAGGTGCTTCACACTTTGCTGCAGTGCACAAGGTTTTTGGTGCCAGTAACGTTTCGAAGATGTTACTCAACATTCCGGTGCACAAGCGTCTCGATGCGGTTATCACAATTTGTTACGAAGCACAGGCACGGTTGAAAGACCCTGTTTATGGTTGCGTCGCTCATATCTTCGCTCTTCAGCAACAGGTAGTGGTGAGTTTACAAGCAGAACTCTCCTATTTACAAGGCCACTTAGCCGCATTAGAGTTACCCCAACCACCATCACCTTCTCCGCCGCAAGCAACCATAGCTCCGCCGGTGGTTTCTTCAATAGCCAACCTTCCACCAGTCTCTTCCTTCACCGTGCCAGCAACATATGACTTATCTTCACTCTTTGATCCCATGGCCCAAACTTCTTTATGGGCCATGCATCAGAGGCCCATAGACCCACGTCAATATTTGGGTAGTAGTGATGGTGATCTTCAAGCATTGGCTCGTGAGCTTATGCATAGACATGGATCTGCTCCTCCTGTGGCATGCTCAAATGCATCCTCATCTCACTCGCTTTCCAAATGA 678 0.4897 MSVNSSCSGSGGGGSGPCGACKFLRRKCVAGCIFAPYFDSEQGASHFAAVHKVFGASNVSKMLLNIPVHKRLDAVITICYEAQARLKDPVYGCVAHIFALQQQVVVSLQAELSYLQGHLAALELPQPPSPSPPQATIAPPVVSSIANLPPVSSFTVPATYDLSSLFDPMAQTSLWAMHQRPIDPRQYLGSSDGDLQALARELMHRHGSAPPVACSNASSSHSLSK. 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10901 225 ProSiteProfiles LOB domain profile. 16 119 IPR004883 -
Seca3g10901 225 PANTHER LOB DOMAIN CONTAINING PROTEIN 15 127 - -
Seca3g10901 225 MobiDBLite consensus disorder prediction 206 225 - -
Seca3g10901 225 Pfam Lateral organ boundaries (LOB) domain 17 115 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10901 Seca-Chr3 255599744 255603420 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10901 20 225 AS2 family AT2G45420 58.850 6.73e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca3g10901 LOB 1.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10901 K21994 - gmx:100779541 300.056