Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10900 ATGGATTGTGGAGGAAAGATTGGTGGCAGTAGTGAAAGAGGTGGGCCTTGTGGTGCCTGCAAGTTTTTGAGGAGAAAGTGTGTGAAGGGTTGCATATTTGCACCATACTTTGACTCAGACCAAGGAACACTTCATTTTGCTGCTGTGCATAAGGTGTTTGGTGCTAGTAATGCCTCTAAGCTACTCATGCGCATCCCAGCACATAAGCGTGTTGATGCTGTTGTTACTCTCTGCTATGAAGCTCTTGCTAGAGCTAGAGACCCTGTTTATGGCTGTGTTGCTCACATCTTTGCCCTTCAACAACAGGTAGTAATGAACTTGCAGGCAGAGTTAACCTATGTTCAGGCCCGTCTTGCCACAATGCAGCGTCTCCCACTCCCAGTAGCTCCTCCTCTTCCACACCCTCAAACCTCTTCATCAACTAGTCTTCATTCCTCCTCAGATCACTTGACATTAAATGCTGACTTGCAAAGTGCTACTGACCTATCTATGCACTTTGATCCTCTTCAATCACATTCAACATCACTACAATTAAGCACCTTTTTAGATCCATCAGATCAACAACTCGAAGATGGGGAACTCCACGCTTTGGCTCGAGAATTTGTGACTAGGTATTTGCCTGGAGTAAGATTCCAGCCACCTAATTCTAACTAA 654 0.4526 MDCGGKIGGSSERGGPCGACKFLRRKCVKGCIFAPYFDSDQGTLHFAAVHKVFGASNASKLLMRIPAHKRVDAVVTLCYEALARARDPVYGCVAHIFALQQQVVMNLQAELTYVQARLATMQRLPLPVAPPLPHPQTSSSTSLHSSSDHLTLNADLQSATDLSMHFDPLQSHSTSLQLSTFLDPSDQQLEDGELHALAREFVTRYLPGVRFQPPNSN. 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10900 217 PANTHER LOB DOMAIN CONTAINING PROTEIN 13 163 - -
Seca3g10900 217 MobiDBLite consensus disorder prediction 129 148 - -
Seca3g10900 217 ProSiteProfiles LOB domain profile. 15 118 IPR004883 -
Seca3g10900 217 Pfam Lateral organ boundaries (LOB) domain 16 115 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10900 Seca-Chr3 255573905 255578516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10900 8 213 AS2 family AT4G00210 54.505 2.55e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca3g10900 LOB 3.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10900 - - tpra:123898243 325.094