Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10898 ATGGAAGGTAGAGAAGGTATTAGTTCTGGGGTTACAGTTATAGGGGCAGAAGCTCCTTCATCTTATCATGTGGCACCAAGGAGTGAAGCTCCAAACCAGGTTCATGTCTCTGATGCAGCTGCTGCTGCTGCTGGAGCTATTGGTGTCTCCCCAGTGAGTGTGGGGTTGGATGGATCAGCAGTTAAGAAGAAACGGGGTAGACCAAGGAAGTATGGACCAGATGGGTCTGTCACTATGGCATTGTCACCAATGCCAATCTCATCTTCAGCTCCACCTTCTAATGACTTTTCATCCGGTAAACGGGGGAAACCGCGTGCGATGGAATACAAGCCGTCAAAAAAAGTTGGACTGGATCATTTTGGTAATTGGTCTTTTGGTGACATGAATGCATGCTCAGATGGTACCAACTTTATGCCACACATAATTACTGTGAACGCTGGTGAGGACATTACAATGAAGGTGATATCCTTTTCTCAACAAGGACCCCGGGCTATATGCATCTTATCTGCTACTGGTGTAATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGGGGTACTTTGACCTATGAGGGCCGTTTTGATATACTTTCCTTGTCGGGATCCTTCATGCCTACTGACAGTCAAGGAACACGAAGTAGATCCGGTGGGATGAGCGTCTCGTTGGCAAGTCCGGATGGTCGTGTTGTAGGTGGCGGAGTTGCTGGTCTTCTCATAGCTGCCGGTCCTGTTCAGGTGGTAGTGGGAAGTTTCCTACCAAGCAAGCAGCCAGCAAGATCAGAAACCAAAGAAGGCCAAGTCTGA 807 0.4796 MEGREGISSGVTVIGAEAPSSYHVAPRSEAPNQVHVSDAAAAAAGAIGVSPVSVGLDGSAVKKKRGRPRKYGPDGSVTMALSPMPISSSAPPSNDFSSGKRGKPRAMEYKPSKKVGLDHFGNWSFGDMNACSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSATGVISNVTLRQPDSSGGTLTYEGRFDILSLSGSFMPTDSQGTRSRSGGMSVSLASPDGRVVGGGVAGLLIAAGPVQVVVGSFLPSKQPARSETKEGQV. 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10898 268 FunFam AT-hook motif nuclear-localized protein 1-like 139 268 - -
Seca3g10898 268 MobiDBLite consensus disorder prediction 81 96 - -
Seca3g10898 268 ProSiteProfiles PPC domain profile profile. 134 268 IPR005175 -
Seca3g10898 268 Pfam Plants and Prokaryotes Conserved (PCC) domain 139 252 IPR005175 -
Seca3g10898 268 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 29 261 IPR039605 GO:0003680
Seca3g10898 268 CDD DUF296 139 252 IPR005175 -
Seca3g10898 268 Gene3D - 139 266 - -
Seca3g10898 268 SUPERFAMILY AF0104/ALDC/Ptd012-like 136 254 - -
Seca3g10898 268 MobiDBLite consensus disorder prediction 59 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10898 Seca-Chr3 255511960 255516607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10898 10 253 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 58.456 9.36e-94 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10898 - - gmx:100796830 403.29