Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10897 ATGCACAGCCGCATCTATAGACCATATTATTGCTTGCTTTCTCCTAAGTTTCAACTTAGTTCTCTAATATTTATTGTTGGTGCTTCTATAGGTGACATGAATACATGGTCCGGTAGAACAAACTTTATGTTGGATATCATTAGTGTTAATACTGGCGAGGTTACTTTGTGTGGATCATTCATTCTTGGCAGCAATGAAGGAGTATCAGGTGGGATGAGTGTCTCACTAGCTACACAAGATTGTCGGGTAATAAGTGGTGGAGTTGCGGGCCTTCTCATAGCTGCCAGTCCTGTCAACCTTCTGTTGTGCGCCGTCCGCCACTACTGTCCGCGGCCGTTCGCTGCTGCTGTCTGTCGTTCCCAGCTGCGAGGTGGTCTACTTCTTTGCTTCTCCTCCCAAATGGCCACGGGAGATGTATCGGATCCTGCACAGGTTATTAATTCCCTGCTTCTCCTTCCTTTTCAAGTTCAAAGATGA 477 0.4633 MHSRIYRPYYCLLSPKFQLSSLIFIVGASIGDMNTWSGRTNFMLDIISVNTGEVTLCGSFILGSNEGVSGGMSVSLATQDCRVISGGVAGLLIAASPVNLLLCAVRHYCPRPFAAAVCRSQLRGGLLLCFSSQMATGDVSDPAQVINSLLLLPFQVQR. 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10897 158 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 55 101 IPR039605 GO:0003680
Seca3g10897 158 SUPERFAMILY AF0104/ALDC/Ptd012-like 54 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10897 Seca-Chr3 255506047 255509548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10897 11 112 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 38.532 2.25e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10897 - - zof:122042624 61.6178