Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10895 ATGAATGCATGGTCCGGTAGAACAAACTTTATGTTGGATATCGTTAGTGTTAATACTGGTGAGGACATTATAATGAAGGTGATATCCTTATTTCAACAAGGAGGCCAAGCTATATGCATCATATCTACGAATGGTGTAATTTCAAATGCTAAACTTCGTGAGACTGGTTCTTCTGAGGATACTTCAACCTATGAGGTGCGGCTGTAA 207 0.3865 MNAWSGRTNFMLDIVSVNTGEDIIMKVISLFQQGGQAICIISTNGVISNAKLRETGSSEDTSTYEVRL. 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10895 68 ProSiteProfiles PPC domain profile profile. 7 68 IPR005175 -
Seca3g10895 68 SUPERFAMILY AF0104/ALDC/Ptd012-like 14 60 - -
Seca3g10895 68 Pfam Plants and Prokaryotes Conserved (PCC) domain 14 53 IPR005175 -
Seca3g10895 68 Gene3D - 13 68 - -
Seca3g10895 68 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 6 65 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10895 Seca-Chr3 255483613 255485904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10895 8 68 AT-hook Motif Nuclear Localized (AHL) Family AT4G00200 55.738 3.34e-17 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10895 - - gmx:100791563 75.0997