Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10869 ATGTTTTTGGTGTATGAGTATATGGAAAGGGGAAGCTTATTTTACAACTTGTCCAATGATGTGGAAGCTCAAGAGTTGAATTGGAGCAAGAGGATAAACATTGTTAAAGAGATAGCCTATGCCCTGTCTCACATGCATCATCATTGTACTCAACCAATTGTTCATCGAGACGTGACTAGTAACAATGTTTTGTTGAATTCAGAGTTACAAGCTTTTGTCTCAGACTTTGGCATAGCAAGATTTCTTAATTGCCATTCATCTAATCAAAGTATGCTTGTTGGTACTCGTGGATATGTTGCTCCAGAATTGGCTTACACCTTGACTGTGACAACAAAAGTAGATGTTTATAGCTTTGGAGTGGTGGCTTTAGAAACAATGATGGGTAGACATCCAGCTGAATTGATCTCCTCTTTGTCAGAACCATCTACTCAAAACAAGAAGCTGAAAGATATATTGGACTCACGTATTCCACTACCATTTTTTCGTAAAGAGATGCAAGATATTGTGCTTGTGGCAACATTAGCATTAGCATGCTTGTGCCCTGACCCAAAATCCAGACCATCAATGCAGGAAGTAGCTAATGAGCTTATAGTTTGCAAGCCACCATTGCTTTGGCATTTTTATGACAGTTCAATCCACCAATTGATGAAACAAAAGATAATGTAA 666 0.3829 MFLVYEYMERGSLFYNLSNDVEAQELNWSKRINIVKEIAYALSHMHHHCTQPIVHRDVTSNNVLLNSELQAFVSDFGIARFLNCHSSNQSMLVGTRGYVAPELAYTLTVTTKVDVYSFGVVALETMMGRHPAELISSLSEPSTQNKKLKDILDSRIPLPFFRKEMQDIVLVATLALACLCPDPKSRPSMQEVANELIVCKPPLLWHFYDSSIHQLMKQKIM. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10869 221 ProSiteProfiles Protein kinase domain profile. 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10869 221 Gene3D Transferase(Phosphotransferase) domain 1 8 201 - -
Seca3g10869 221 ProSitePatterns Tyrosine protein kinases specific active-site signature. 53 65 IPR008266 GO:0004672|GO:0006468
Seca3g10869 221 Pfam Protein kinase domain 1 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10869 221 PANTHER LEUCINE RICH REPEAT KINASE 2 1 200 - -
Seca3g10869 221 PIRSF ILK 1 200 - -
Seca3g10869 221 FunFam MDIS1-interacting receptor like kinase 2 8 201 - -
Seca3g10869 221 SUPERFAMILY Protein kinase-like (PK-like) 2 198 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10869 Seca-Chr3 255252699 255253531 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10869 2 201 Receptor kinase-like Gene Family AT1G72180 35.545 1.07e-38 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca3g10869 Pkinase 3.4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10869 - - vun:114165534 358.992