Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10832 ATGGCCACTACCACCACCTTTTGCCTCCAAGAAATGGAGCTGCTCCATATGGCCCAAACCCAAGTTTCACAGGCCAAGAATTGGGTTGGGAATTCTGTGAGATTGCATGGCTTAGGAAGCCTGCAGAGCCTTAATTCAGATCAAAGTGGTGCTCATAATCAAACTAGTACTACTGTTGTGGCTCTAAGAGATTGTGCCAAGCTCTATGAGGAGAGTGAGTCTAGGCTCTCTCACATGGTCTCTGACAATAGTAATTACACCAAAGAAGATGCACTTACTTGGGTAAGTGCTGTGATGACAAACCACAGGACTTGTTTGGATGGATTGCAGGACAAAGGGTATGTTGAAGCTCATGGTCAAGTTTTGGGTAGAAACTTGACTATGTTGCTTGGACAAGCTCTTGTTTTGTATTCAAAGCACAAAGAATTAGTTCCAGGACCACCTCAGAGAACAGTATCCAAAGCAAATGCTGATGGTCTTTTAGAATCATGGAGTCCAGCAAGCTACAAGGCAGACTTCACAGTGGCACAGGATGGTTCAGGCAGCCACAGAACAATCAAAGAAGCAGTAGATGCACTGGCTTCAATGGGGCACAACCGTCCTGGTAGAGCAGTTATACATGTAAAAGCAGGGGTCTACCATGAGAAAGTTGAGATTGGAAGTAAGCTACACAATGTGATGTTTGTAGGAGATGGCATAGACAGAACCATCATCACTGGAAACAGAAATGTTGTTCAGGGCTCTTCCACTCTTGGCTCTGCCACATTTGATGTATCTGGGGATGGATTTTGGGCTAGAGATATGACATTTGAGAACACTGCAGGCCCTGAAAAGCACCAAGCAGTGGCACTTAAGGTAAGCTCTGACTTATCAGTGTTCTACAGGTGCAGCTTCAAAGGTTACCAAGACACTCTTTATGTGCACTCAAATCGCCAATTCTACCGTGATTGTCACATATATGGCACTGTGGATTTCATATTTGGGGATGCAACAGTGGTGTTACAAAACTGTGACATCTTTGTGAGGAAACCAATGAGCCATCAATCTAACTTCATCACAGCACAAGGAAGAGATGATCCTAACAAACCAACTGGGATTTCAATCATTAATAGCAGGGTTAGGCCTGCATCTGAATTTGTCATGTCAAAGGATTCTTCCAAGACCTTCTTAGGCAGGCCTTGGAAAAAGTACTCAAGGACTGTGTTTCTGAAAACTGATTTAGATGGGTTGATTCATCCAAGAGGGTGGAGTGAATGGACTGGAAACTTTGCACTCTCAACTTTGTACTATGGAGAGTATATGAACTCAGGAAATGGTGCATCTACCCAGAATAGAGTGAACTGGCCTGGTTTTCATGTGCTGAGGAGTGCTAGTGAGGCATCACCCTTTACAGTGAGTCAGTTTCTGCAAGGGGAAAGATGGATTCCAGCTTCAGGGGTGCCTTTTTGGGCTGGAATTTAA 1461 0.4428 MATTTTFCLQEMELLHMAQTQVSQAKNWVGNSVRLHGLGSLQSLNSDQSGAHNQTSTTVVALRDCAKLYEESESRLSHMVSDNSNYTKEDALTWVSAVMTNHRTCLDGLQDKGYVEAHGQVLGRNLTMLLGQALVLYSKHKELVPGPPQRTVSKANADGLLESWSPASYKADFTVAQDGSGSHRTIKEAVDALASMGHNRPGRAVIHVKAGVYHEKVEIGSKLHNVMFVGDGIDRTIITGNRNVVQGSSTLGSATFDVSGDGFWARDMTFENTAGPEKHQAVALKVSSDLSVFYRCSFKGYQDTLYVHSNRQFYRDCHIYGTVDFIFGDATVVLQNCDIFVRKPMSHQSNFITAQGRDDPNKPTGISIINSRVRPASEFVMSKDSSKTFLGRPWKKYSRTVFLKTDLDGLIHPRGWSEWTGNFALSTLYYGEYMNSGNGASTQNRVNWPGFHVLRSASEASPFTVSQFLQGERWIPASGVPFWAGI. 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10832 486 ProSitePatterns Pectinesterase signature 2. 319 328 IPR033131 -
Seca3g10832 486 Gene3D - 166 486 IPR012334 -
Seca3g10832 486 Gene3D Invertase/pectin methylesterase inhibitor family protein 13 139 IPR035513 -
Seca3g10832 486 FunFam Pectinesterase 166 486 - -
Seca3g10832 486 PANTHER PECTINESTERASE 51 476 - -
Seca3g10832 486 SUPERFAMILY Pectin lyase-like 169 485 IPR011050 -
Seca3g10832 486 Pfam Pectinesterase 172 472 IPR000070 GO:0030599|GO:0042545
Seca3g10832 486 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 138 IPR035513 -
Seca3g10832 486 NCBIfam pectinesterase inhibitor domain 56 129 IPR006501 GO:0004857
Seca3g10832 486 Pfam Plant invertase/pectin methylesterase inhibitor 42 120 IPR006501 GO:0004857
Seca3g10832 486 SMART PMEI_2 1 136 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10832 Seca-Chr3 254774077 254776959 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10832 2 486 Carbohydrate Esterase AT3G60730 55.556 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10832 K01051 - gmx:100792852 778.089