Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10830 ATGATGTCCAACAATGTTACTAAGTTGTTAAGCAACACCTTGGCTCTTAACAAGGTTCAATATCAAGAACCAAGTTACAAAGAAGGGTTCCCAACATGGGTTAAGCCACGTGACAGGAAGTTGTTGCAAGCATCTTCTCCATCTTCACAAGCTAATGTAGTTGTGGCAAAAGATGGGTCTGGAAAGTACACAACTGTCAGTGAAGCTATAAATGCTGCACCACAAAGTAGCAGTGGAAGGTATGTGATATATGTGAAGGCAGGGACATATAATGAACAAGTTCAGATTAGGGCAAAGAATATAATGTTGGTTGGAGATGGTATTGGCAAAACCATAATCACAGGTAGCCAAAGTGTTGGAGGAGGCACCACAACCTTCCGTTCTGCCACTGTTGGTGTTGTTGGAGATGGATTTATGGCTCAAGATATAACATTTAGGAACACTGCTGGAGCAGCAAACCATCAAGCAGTTGCATTACGTTCTGGATCAGATTTATCAGTATTTTACAGATGTAGCTTTGAAGGTTATCAAGACACATTATATGTGCTTTCTCAGAGGCAATTCTATAGGGAATGTGACATTTATGGCACAGTTGACTTTATCTTTGGTAATGCTGCAGTGGTATTCCAAAATTGTAATCTTTTTGCTAGAAATCCTCCAAACAAAGTCAACACAATCACTGCTCAAGGAAGAACTGATCCAAACCAAAACACTGGTATTTCTATTCACAATTGTAGGGTTACTGCTGCCTCAGATTTGGAAGGTGTTCAAGGATCTGTTAGAACTTATCTTGGAAGACCTTGGCAACAATATTCTAGAACAGTTTTCATGAAGACTTATCTTGATAGTTTGATAAATCCAGCGGGTTGGATGGAATGGAGTGGTAACTTTGCATTAAGTACTCTATATTATGGAGAGTACATGAACACAGGTCCTGGTTCTTCCACTGCAGGTAGAGTGAATTGGCCAGGGTATCATGTCATTACCAGTGCTTCTAGAGCTAATGTAGTTGTTGCAAAAGATGGTTCTGGAAAGTACACAACTGTTAGTGCAGCTATAAATGCTGCACCAAAGAGTAGTGGAAGGTATGTGATACATGTGAAGGCAGGGATATACAATGAACAAGTTGAGATAAAAGCAAAGAATATAATGTTAGTAGGAGATGGTATTGGAAAGACCATAATCACAGGTAGCAAGAGTGTTGGAGGAGGCACCACAACCTTCCGTTCTGCCACTGTTGCTGCTGTTGGAGATGGATTTATTGCTCAAGATATCACATTTAGGAACACTGCTGGTGCAAAAAACCACCAAGCTGTTGCATTGCGTTCTGGATCTGACTTATCAGTCTTTTATAGATGCAGCTTTGAAGGTTACCAAGACACACTGTATGTGCACTCTGAGAGACAATTCTATAGGGATTGTAATATTTATGGTACTGTTGACTTCATCTTTGGTAATGCTGCTGTTGTGTTACAAAATTGTAACATATTTGCAAGAAACCCTCCAAACAAAGTCAACACAATCACTGCTCAAGGAAGAACTGATCCAAATCAAAACACTGGTATTTCTATTCATAATTGTAGGGTTACTGCTGCCTCAGATTTGAAACCAGTTCAAGGCTCTGTGAGGACTTATCTTGGAAGACCTTGGAAGCAATATTCTAGAACAGTATTCATGAAGACATATCTTGATAGTTTGATCAATCCAACAGGTTGGATGGAATGGAGTGGTAACTTTGCCTTGAGAACTTTGTACTATGGAGAATACATGAACACAGGACCAGGTTCTTCAACTAGGAGTCGAGTTAAATGGCCAGGTTATCGCGTTATTACTAGTGCTTCTGAAGCCTCAAAATTCACCGTTGCAAATTTCATTGCTGGAAACTCATGGTTACCTTCCACCAAAGTGCCTTTCACGTCTAGTCTTTAA 1929 0.4002 MMSNNVTKLLSNTLALNKVQYQEPSYKEGFPTWVKPRDRKLLQASSPSSQANVVVAKDGSGKYTTVSEAINAAPQSSSGRYVIYVKAGTYNEQVQIRAKNIMLVGDGIGKTIITGSQSVGGGTTTFRSATVGVVGDGFMAQDITFRNTAGAANHQAVALRSGSDLSVFYRCSFEGYQDTLYVLSQRQFYRECDIYGTVDFIFGNAAVVFQNCNLFARNPPNKVNTITAQGRTDPNQNTGISIHNCRVTAASDLEGVQGSVRTYLGRPWQQYSRTVFMKTYLDSLINPAGWMEWSGNFALSTLYYGEYMNTGPGSSTAGRVNWPGYHVITSASRANVVVAKDGSGKYTTVSAAINAAPKSSGRYVIHVKAGIYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAAVGDGFIAQDITFRNTAGAKNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRDCNIYGTVDFIFGNAAVVLQNCNIFARNPPNKVNTITAQGRTDPNQNTGISIHNCRVTAASDLKPVQGSVRTYLGRPWKQYSRTVFMKTYLDSLINPTGWMEWSGNFALRTLYYGEYMNTGPGSSTRSRVKWPGYRVITSASEASKFTVANFIAGNSWLPSTKVPFTSSL. 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10830 642 ProSitePatterns Pectinesterase signature 2. 476 485 IPR033131 -
Seca3g10830 642 SMART complete 367 544 IPR006633 -
Seca3g10830 642 SMART complete 85 262 IPR006633 -
Seca3g10830 642 ProSitePatterns Pectinesterase signature 1. 77 96 IPR018040 -
Seca3g10830 642 SUPERFAMILY Pectin lyase-like 329 639 IPR011050 -
Seca3g10830 642 ProSitePatterns Pectinesterase signature 2. 194 203 IPR033131 -
Seca3g10830 642 PANTHER PECTINESTERASE 334 634 - -
Seca3g10830 642 Pfam Pectinesterase 335 628 IPR000070 GO:0030599|GO:0042545
Seca3g10830 642 Gene3D - 46 333 IPR012334 -
Seca3g10830 642 Gene3D - 334 642 IPR012334 -
Seca3g10830 642 ProSitePatterns Pectinesterase signature 1. 359 378 IPR018040 -
Seca3g10830 642 SUPERFAMILY Pectin lyase-like 47 334 IPR011050 -
Seca3g10830 642 FunFam Pectinesterase 46 332 - -
Seca3g10830 642 FunFam Pectinesterase 333 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10830 Seca-Chr3 254731188 254739775 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10830 329 642 Carbohydrate Esterase AT2G45220 76.115 4.24e-172 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10830 K01051 - gmx:100783964 597.045