Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10827 ATGGCGTCACTTCGTTTTCTAGCAACCCTTTTAATCATTATTCCGTTTCTATTTTCCTCTAATGTTTCCGGTTACTCAATGAATTTCATCAAATCATGGTGCAACCAAACACCTTATCCTCAGCCATGTGAGTACTATTTGAGCAACAATGCTTTCAACAAACCCATTAAAAACAAGTCCGATTTTTTCAAAGTTTCCCTTCAACTAGCCATAGAGAGAGCACAAAGGGGCCAAATGAACACACATTCACTAGGCCCAAAGTGTAGGAATGCACATGAAAGAGCTGCATGGGCTGATTGTCTTGAGCTCTATGAGCACACTATCCAAAGGCTCAACAAAACCATAGACCCTAACACTAAGTGTTCCCAAACCGATGCTCAAACTTGGCTTAGCACAGCTCTCACTAACCTTGAGACTTGTAGAGCTGGGTTCTATGACCTTGGGGTTCAAAACTATTTATTGCCCTTGTTGTCCAATAATGTCACTCAATTGTTAAGTAACACCCTTTCCCTAAATAAGGTTCCTTTTCAACAACCAAGTTATAAAGATGGGTTCCCAACATGGGTTAAGCCTGGTGATAGGAAGTTGTTGCAAACATCTTCAGCTGCTTCTAAGGCCAATGTGGTTGTGGCTAAAGATGGGTCTGGCAAGTACACAACAGTGAAGGCAGCTGTAGATGCTGCACCAAAGAGTAGTAGTGGGAGGTATGTGATATATGTGAAGGCAGGGACATACAATGAACAAGTTGAGGTAAAAGGAAAGAATATAATGTTGGTTGGAGATGGTATTGGAAAGACTGTTATCACAGGTAGCAAAAGTGTTGGAGGAGGCACCACCACCTTCCGTTCAGCCACCGTTGCTGCTGTCGGTGATGGATTCATTGCTCAAGACATCACATTTAGGAACACTGCAGGAGCAGCAAATCACCAAGCTGTTGCATTTCGTTCTGGATCTGACTTATCAGTGTTTTATAGATGCAGCTTTGAAGGTTATCAAGATACACTATATGTTCATTCAGAGAGGCAATTTTATAGAGACTGTGACATATATGGCACAGTTGATTTTATCTTTGGTAATGCTGCTGTGGTTTTGCAAAATTGCAACATTTATGCAAGAAACCCACCTCAAAAAACCATCACAGTAACTGCTCAAGGTAGAACTGATCCAAACCAAAACACTGGAATCATCATTCACAACTCTAAGGTTACTGGTGCCTCAGGTTTCAGTTCAGGTTCTGTTAAGTCCTACCTTGGAAGGCCATGGCAAAAATACTCAAGGACAGTGTTCATGAAAACTTTCCTTGATAGTTTGATAAACCCAGCTGGTTGGATGGAATGGAGTGGTAATTTTGCTTTGGATACTTTGTACTATGCAGAGTATGCAAACACAGGTCCAGGTTCTTCCACTGCAAACAGGGTCAATTGGAAGGGTTACCATGTTCTTACTAGTGCATCTCAGGCCTCACAATTCACAGTTGGGAACTTTATTGCTGGTAATTCATGGTTACCAAGCACTGGTGTTCCTTTCACCTCAGGGCTTTGA 1542 0.4189 MASLRFLATLLIIIPFLFSSNVSGYSMNFIKSWCNQTPYPQPCEYYLSNNAFNKPIKNKSDFFKVSLQLAIERAQRGQMNTHSLGPKCRNAHERAAWADCLELYEHTIQRLNKTIDPNTKCSQTDAQTWLSTALTNLETCRAGFYDLGVQNYLLPLLSNNVTQLLSNTLSLNKVPFQQPSYKDGFPTWVKPGDRKLLQTSSAASKANVVVAKDGSGKYTTVKAAVDAAPKSSSGRYVIYVKAGTYNEQVEVKGKNIMLVGDGIGKTVITGSKSVGGGTTTFRSATVAAVGDGFIAQDITFRNTAGAANHQAVAFRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRDCDIYGTVDFIFGNAAVVLQNCNIYARNPPQKTITVTAQGRTDPNQNTGIIIHNSKVTGASGFSSGSVKSYLGRPWQKYSRTVFMKTFLDSLINPAGWMEWSGNFALDTLYYAEYANTGPGSSTANRVNWKGYHVLTSASQASQFTVGNFIAGNSWLPSTGVPFTSGL. 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10827 513 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Seca3g10827 513 Pfam Pectinesterase 207 499 IPR000070 GO:0030599|GO:0042545
Seca3g10827 513 SUPERFAMILY Pectin lyase-like 201 512 IPR011050 -
Seca3g10827 513 Gene3D - 201 513 IPR012334 -
Seca3g10827 513 NCBIfam pectinesterase inhibitor domain 7 174 IPR006501 GO:0004857
Seca3g10827 513 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 174 IPR035513 -
Seca3g10827 513 CDD PMEI-like_3 32 173 - -
Seca3g10827 513 SMART PMEI_2 25 171 IPR006501 GO:0004857
Seca3g10827 513 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 174 IPR035513 -
Seca3g10827 513 Pfam Plant invertase/pectin methylesterase inhibitor 28 171 IPR006501 GO:0004857
Seca3g10827 513 FunFam Pectinesterase 25 174 - -
Seca3g10827 513 PANTHER PECTINESTERASE 14 503 - -
Seca3g10827 513 FunFam Pectinesterase 201 513 - -
Seca3g10827 513 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10827 Seca-Chr3 254681845 254685937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10827 1 513 Carbohydrate Esterase AT2G45220 67.054 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10827 K01051 - gmx:100782892 909.827