Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10825 ATGCGATTCAAGCTCGGTAAGCGCGTGAACCGGATCACCAGATGGATCTTCAGAAGGTTCCGGACGCGACCCAGATACCATCGTCTGGGTTCCTCGCCGGCGAAGAACCCCATGATGACGAAGCTTCTCACATGGGGTCGCAAGCTAACGAGTAGAGCGAGGTCCATCTGCGCCAAAACCGGGTCAGGTTACACTCCGATTGGATCCGACCCGGTTCAGGACAACGCTCCGACGGTGCCAAAGGGGCACTTGGCGGTGTACGTTGGGCAGAAGGACGGCGAGTTTCACCGGGTTCTGGTGCCGGTGGTTTATTTCAACCACCCCTTGTTCAGTGAGTTGCTGAGGGAAGCGGAGAAGGAGTACGGGTTTCACCACCCGGGTGGGATCACGATTCCTTGCCGGGTCACCGAGTTTGAACGAGTCAAGACCCGAATTGCATCCGGGTCGGGTGTCAGCAACAGCGCAAGGAGATTGGCGTGGCGGCGACATTATTGA 495 0.5778 MRFKLGKRVNRITRWIFRRFRTRPRYHRLGSSPAKNPMMTKLLTWGRKLTSRARSICAKTGSGYTPIGSDPVQDNAPTVPKGHLAVYVGQKDGEFHRVLVPVVYFNHPLFSELLREAEKEYGFHHPGGITIPCRVTEFERVKTRIASGSGVSNSARRLAWRRHY. 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10825 164 Pfam Auxin responsive protein 60 142 IPR003676 GO:0009733
Seca3g10825 164 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 56 140 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10825 Seca-Chr3 254665499 254665993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10825 77 138 Calmodulin-binding Proteins AT3G43120 53.226 5.16e-17 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10825 K14488 - gmx:100808164 224.172