Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10822 ATGTCCGCCTCATCTACAACTTCCTTTTCACCGGACCAACACCTCTCTCCCTCCGACCAGCTCTGTTATGTCCAATGCAACTTCTGTGACACTGTCCTCGCGGTGAGTGTTCCTTGCAGCAGTTTGTTCAAGACTGTGACAGTGAGATGTGGTCATTGCACCAACCTTCTCTCAGCCAACATGCGTGGCCTTCTTCTTCCTTCTGCTAATCAACTTCACCTTGGCCACTCTTTCTTCACTCCTCAAAATCTTCTAGAGGAGATTCGGAATGCACCTTCCGCAAATATGATGATGAATCAGATGCCAAATCCAAATGATTTGATGATGAGCAACATGCGAGTAGGACCAGAAGAAACCCCTAAACCTCCACCACCTAATAGACGTGAGATTTTTTTAATTTTATCTAATTTCTTTCTTAACTTCTTCAATTAA 432 0.4398 MSASSTTSFSPDQHLSPSDQLCYVQCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSANMRGLLLPSANQLHLGHSFFTPQNLLEEIRNAPSANMMMNQMPNPNDLMMSNMRVGPEETPKPPPPNRREIFLILSNFFLNFFN. 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10822 143 Pfam YABBY protein 17 111 IPR006780 GO:0007275
Seca3g10822 143 PANTHER PROTEIN YABBY 6-RELATED 4 128 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10822 Seca-Chr3 254613934 254617167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10822 18 65 C2C2-YABBY Transcription Factor Family AT2G26580 68.750 8.71e-20 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Seca3g10822 YABBY 3.2e-29 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10822 K25796 - gmx:100781267 221.09