Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10806 ATGGCTGAAGATGGGTGTGCACCCTTTTCGCCCCTTGCCTCAGAGAATGACTCCTTGGAGCAACACTCAGAGGGTTTCACCACTCTCTCAAACAACTCCTCTGTCTTAGGCGATTCAAGTAAAGGAAACATGATCTCTCTTTCTAAAAAGACTTTGGATCTAGTGCCATCACCAACACCGCCCTCCTCCTCTAACGGAGAGTTCCACATCCTTTCCTGCAAAACCAAGGAGGAGAAGGGCGTAACCACACCCTCCAACACTAAGCGACGAAAGGGCAGGCCCCGTGGCTCTAAGAACAAACCCAAGCCACCCATCATAATCAAGGAAGATACCAACCAACTTGTTAAACCAATCATCATTGAAATCTCTGCTGGAAATGACATTGTTGAGGCCATCATCAAGTTCGCTTCCCGTCATTGTGTTGGTATCTCAGTGCTAAGTTGTTCTGGTTCTGTATCTAATGTTACCCTTCGCCACCCTCTTTATGGTATTGCTCCTCCTCTCTCTTTTAATGGGAGCTTCAACATTTTATCTCTCCTAGGTACTTACATAAGTGGTGTTTTTACTCCACTCACCCGTACCCCTGCTTGTTCCTCCTTTTTCATTAACCTTTCAGGGCCACAGAGCAAAGTATTTGGTGGGATTGTTGGAGGAAAGGTTGTGGCTGCAAATAATGTGGTTGTTGTGGGTTCAATGTTCAAGAAGCTTGAGCACCACAAGGTGCGCATCGTCAATGGAATACTAGTTGAAGAAGGTGACATCACATATGTGCCTGCCATTAATGTCGATGCAAGCAACCCCAGTTGCATCACCAACACAACTGCCATTGCTGCTAACCAACACCAGATATAA 852 0.4613 MAEDGCAPFSPLASENDSLEQHSEGFTTLSNNSSVLGDSSKGNMISLSKKTLDLVPSPTPPSSSNGEFHILSCKTKEEKGVTTPSNTKRRKGRPRGSKNKPKPPIIIKEDTNQLVKPIIIEISAGNDIVEAIIKFASRHCVGISVLSCSGSVSNVTLRHPLYGIAPPLSFNGSFNILSLLGTYISGVFTPLTRTPACSSFFINLSGPQSKVFGGIVGGKVVAANNVVVVGSMFKKLEHHKVRIVNGILVEEGDITYVPAINVDASNPSCITNTTAIAANQHQI. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10806 283 CDD DUF296 116 218 IPR005175 -
Seca3g10806 283 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 76 242 IPR014476 GO:0003680
Seca3g10806 283 MobiDBLite consensus disorder prediction 14 70 - -
Seca3g10806 283 SUPERFAMILY AF0104/ALDC/Ptd012-like 115 232 - -
Seca3g10806 283 MobiDBLite consensus disorder prediction 71 85 - -
Seca3g10806 283 Gene3D - 115 244 - -
Seca3g10806 283 Pfam Plants and Prokaryotes Conserved (PCC) domain 116 230 IPR005175 -
Seca3g10806 283 MobiDBLite consensus disorder prediction 1 105 - -
Seca3g10806 283 ProSiteProfiles PPC domain profile profile. 111 253 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10806 Seca-Chr3 254408558 254409409 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10806 88 241 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 42.138 1.70e-37 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10806 - - cam:101509190 153.295